Cargando…
Crystal structure, Hirshfeld surface analysis and density functional theory study of 6-methyl-2-[(5-methylisoxazol-3-yl)methyl]-1H-benzimidazole
In the title molecule, C(13)H(13)N(3)O, the isoxazole ring is inclined to the benzimidazole ring at a dihedral angle of 69.28 (14)°. In the crystal, N—H⋯N hydrogen bonds between neighboring benzimidazole rings form chains along the a-axis direction. Hirshfeld surface analysis indicates that the mos...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8025869/ https://www.ncbi.nlm.nih.gov/pubmed/33936764 http://dx.doi.org/10.1107/S2056989021002723 |
_version_ | 1783675571479248896 |
---|---|
author | Idrissi, Ahlam Chkirate, Karim Abad, Nadeem Djerrari, Bahia Achour, Redouane Essassi, El Mokhtar Van Meervelt, Luc |
author_facet | Idrissi, Ahlam Chkirate, Karim Abad, Nadeem Djerrari, Bahia Achour, Redouane Essassi, El Mokhtar Van Meervelt, Luc |
author_sort | Idrissi, Ahlam |
collection | PubMed |
description | In the title molecule, C(13)H(13)N(3)O, the isoxazole ring is inclined to the benzimidazole ring at a dihedral angle of 69.28 (14)°. In the crystal, N—H⋯N hydrogen bonds between neighboring benzimidazole rings form chains along the a-axis direction. Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from H⋯H (48.8%), H⋯C/C⋯H (20.9%) and H⋯N/N⋯H (19.3%) interactions. The optimized structure calculated using density functional theory at the B3LYP/6–311 G(d,p) level is compared with the experimentally determined structure in the solid state. The calculated highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) energy gap is 4.9266 eV. |
format | Online Article Text |
id | pubmed-8025869 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-80258692021-04-30 Crystal structure, Hirshfeld surface analysis and density functional theory study of 6-methyl-2-[(5-methylisoxazol-3-yl)methyl]-1H-benzimidazole Idrissi, Ahlam Chkirate, Karim Abad, Nadeem Djerrari, Bahia Achour, Redouane Essassi, El Mokhtar Van Meervelt, Luc Acta Crystallogr E Crystallogr Commun Research Communications In the title molecule, C(13)H(13)N(3)O, the isoxazole ring is inclined to the benzimidazole ring at a dihedral angle of 69.28 (14)°. In the crystal, N—H⋯N hydrogen bonds between neighboring benzimidazole rings form chains along the a-axis direction. Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from H⋯H (48.8%), H⋯C/C⋯H (20.9%) and H⋯N/N⋯H (19.3%) interactions. The optimized structure calculated using density functional theory at the B3LYP/6–311 G(d,p) level is compared with the experimentally determined structure in the solid state. The calculated highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) energy gap is 4.9266 eV. International Union of Crystallography 2021-03-19 /pmc/articles/PMC8025869/ /pubmed/33936764 http://dx.doi.org/10.1107/S2056989021002723 Text en © Idrissi et al. 2021 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Communications Idrissi, Ahlam Chkirate, Karim Abad, Nadeem Djerrari, Bahia Achour, Redouane Essassi, El Mokhtar Van Meervelt, Luc Crystal structure, Hirshfeld surface analysis and density functional theory study of 6-methyl-2-[(5-methylisoxazol-3-yl)methyl]-1H-benzimidazole |
title | Crystal structure, Hirshfeld surface analysis and density functional theory study of 6-methyl-2-[(5-methylisoxazol-3-yl)methyl]-1H-benzimidazole |
title_full | Crystal structure, Hirshfeld surface analysis and density functional theory study of 6-methyl-2-[(5-methylisoxazol-3-yl)methyl]-1H-benzimidazole |
title_fullStr | Crystal structure, Hirshfeld surface analysis and density functional theory study of 6-methyl-2-[(5-methylisoxazol-3-yl)methyl]-1H-benzimidazole |
title_full_unstemmed | Crystal structure, Hirshfeld surface analysis and density functional theory study of 6-methyl-2-[(5-methylisoxazol-3-yl)methyl]-1H-benzimidazole |
title_short | Crystal structure, Hirshfeld surface analysis and density functional theory study of 6-methyl-2-[(5-methylisoxazol-3-yl)methyl]-1H-benzimidazole |
title_sort | crystal structure, hirshfeld surface analysis and density functional theory study of 6-methyl-2-[(5-methylisoxazol-3-yl)methyl]-1h-benzimidazole |
topic | Research Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8025869/ https://www.ncbi.nlm.nih.gov/pubmed/33936764 http://dx.doi.org/10.1107/S2056989021002723 |
work_keys_str_mv | AT idrissiahlam crystalstructurehirshfeldsurfaceanalysisanddensityfunctionaltheorystudyof6methyl25methylisoxazol3ylmethyl1hbenzimidazole AT chkiratekarim crystalstructurehirshfeldsurfaceanalysisanddensityfunctionaltheorystudyof6methyl25methylisoxazol3ylmethyl1hbenzimidazole AT abadnadeem crystalstructurehirshfeldsurfaceanalysisanddensityfunctionaltheorystudyof6methyl25methylisoxazol3ylmethyl1hbenzimidazole AT djerraribahia crystalstructurehirshfeldsurfaceanalysisanddensityfunctionaltheorystudyof6methyl25methylisoxazol3ylmethyl1hbenzimidazole AT achourredouane crystalstructurehirshfeldsurfaceanalysisanddensityfunctionaltheorystudyof6methyl25methylisoxazol3ylmethyl1hbenzimidazole AT essassielmokhtar crystalstructurehirshfeldsurfaceanalysisanddensityfunctionaltheorystudyof6methyl25methylisoxazol3ylmethyl1hbenzimidazole AT vanmeerveltluc crystalstructurehirshfeldsurfaceanalysisanddensityfunctionaltheorystudyof6methyl25methylisoxazol3ylmethyl1hbenzimidazole |