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A novel defined pyroptosis-related gene signature for predicting the prognosis of ovarian cancer

Ovarian cancer (OC) is a highly malignant gynaecological tumour that has a very poor prognosis. Pyroptosis has been demonstrated in recent years to be an inflammatory form of programmed cell death. However, the expression of pyroptosis-related genes in OC and their correlations with prognosis remain...

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Autores principales: Ye, Ying, Dai, Qinjin, Qi, Hongbo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8026591/
https://www.ncbi.nlm.nih.gov/pubmed/33828074
http://dx.doi.org/10.1038/s41420-021-00451-x
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author Ye, Ying
Dai, Qinjin
Qi, Hongbo
author_facet Ye, Ying
Dai, Qinjin
Qi, Hongbo
author_sort Ye, Ying
collection PubMed
description Ovarian cancer (OC) is a highly malignant gynaecological tumour that has a very poor prognosis. Pyroptosis has been demonstrated in recent years to be an inflammatory form of programmed cell death. However, the expression of pyroptosis-related genes in OC and their correlations with prognosis remain unclear. In this study, we identified 31 pyroptosis regulators that were differentially expressed between OC and normal ovarian tissues. Based on these differentially expressed genes (DEGs), all OC cases could be divided into two subtypes. The prognostic value of each pyroptosis-related gene for survival was evaluated to construct a multigene signature using The Cancer Genome Atlas (TCGA) cohort. By applying the least absolute shrinkage and selection operator (LASSO) Cox regression method, a 7-gene signature was built and classified all OC patients in the TCGA cohort into a low- or high-risk group. OC patients in the low-risk group showed significantly higher survival possibilities than those in the high-risk group (P < 0.001). Utilizing the median risk score from the TCGA cohort, OC patients from a Gene Expression Omnibus (GEO) cohort were divided into two risk subgroups, and the low-risk group had increased overall survival (OS) time (P = 0.014). Combined with the clinical characteristics, the risk score was found to be an independent factor for predicting the OS of OC patients. Gene ontology (GO) and Kyoto Encylopedia of Genes and Genomes (KEGG) analyses indicated that immune-related genes were enriched and that the immune status was decreased in the high-risk group. In conclusion, pyroptosis-related genes play important roles in tumour immunity and can be used to predict the prognosis of OCs.
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spelling pubmed-80265912021-04-21 A novel defined pyroptosis-related gene signature for predicting the prognosis of ovarian cancer Ye, Ying Dai, Qinjin Qi, Hongbo Cell Death Discov Article Ovarian cancer (OC) is a highly malignant gynaecological tumour that has a very poor prognosis. Pyroptosis has been demonstrated in recent years to be an inflammatory form of programmed cell death. However, the expression of pyroptosis-related genes in OC and their correlations with prognosis remain unclear. In this study, we identified 31 pyroptosis regulators that were differentially expressed between OC and normal ovarian tissues. Based on these differentially expressed genes (DEGs), all OC cases could be divided into two subtypes. The prognostic value of each pyroptosis-related gene for survival was evaluated to construct a multigene signature using The Cancer Genome Atlas (TCGA) cohort. By applying the least absolute shrinkage and selection operator (LASSO) Cox regression method, a 7-gene signature was built and classified all OC patients in the TCGA cohort into a low- or high-risk group. OC patients in the low-risk group showed significantly higher survival possibilities than those in the high-risk group (P < 0.001). Utilizing the median risk score from the TCGA cohort, OC patients from a Gene Expression Omnibus (GEO) cohort were divided into two risk subgroups, and the low-risk group had increased overall survival (OS) time (P = 0.014). Combined with the clinical characteristics, the risk score was found to be an independent factor for predicting the OS of OC patients. Gene ontology (GO) and Kyoto Encylopedia of Genes and Genomes (KEGG) analyses indicated that immune-related genes were enriched and that the immune status was decreased in the high-risk group. In conclusion, pyroptosis-related genes play important roles in tumour immunity and can be used to predict the prognosis of OCs. Nature Publishing Group UK 2021-04-07 /pmc/articles/PMC8026591/ /pubmed/33828074 http://dx.doi.org/10.1038/s41420-021-00451-x Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Ye, Ying
Dai, Qinjin
Qi, Hongbo
A novel defined pyroptosis-related gene signature for predicting the prognosis of ovarian cancer
title A novel defined pyroptosis-related gene signature for predicting the prognosis of ovarian cancer
title_full A novel defined pyroptosis-related gene signature for predicting the prognosis of ovarian cancer
title_fullStr A novel defined pyroptosis-related gene signature for predicting the prognosis of ovarian cancer
title_full_unstemmed A novel defined pyroptosis-related gene signature for predicting the prognosis of ovarian cancer
title_short A novel defined pyroptosis-related gene signature for predicting the prognosis of ovarian cancer
title_sort novel defined pyroptosis-related gene signature for predicting the prognosis of ovarian cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8026591/
https://www.ncbi.nlm.nih.gov/pubmed/33828074
http://dx.doi.org/10.1038/s41420-021-00451-x
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