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Use of Next-Generation Sequencing for the Molecular Diagnosis of 1,102 Patients With a Autosomal Optic Neuropathy
Advances in next-generation sequencing (NGS) facilitate the diagnosis of genetic disorders. To evaluate its use for the molecular diagnosis of inherited optic neuropathy (ION), a blinding disease caused by the degeneration of retinal ganglion cells, we performed genetic analysis using targeted NGS o...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8027346/ https://www.ncbi.nlm.nih.gov/pubmed/33841295 http://dx.doi.org/10.3389/fneur.2021.602979 |
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author | Charif, Majida Bris, Céline Goudenège, David Desquiret-Dumas, Valérie Colin, Estelle Ziegler, Alban Procaccio, Vincent Reynier, Pascal Bonneau, Dominique Lenaers, Guy Amati-Bonneau, Patrizia |
author_facet | Charif, Majida Bris, Céline Goudenège, David Desquiret-Dumas, Valérie Colin, Estelle Ziegler, Alban Procaccio, Vincent Reynier, Pascal Bonneau, Dominique Lenaers, Guy Amati-Bonneau, Patrizia |
author_sort | Charif, Majida |
collection | PubMed |
description | Advances in next-generation sequencing (NGS) facilitate the diagnosis of genetic disorders. To evaluate its use for the molecular diagnosis of inherited optic neuropathy (ION), a blinding disease caused by the degeneration of retinal ganglion cells, we performed genetic analysis using targeted NGS of 22 already known and candidate genes in a cohort of 1,102 affected individuals. The panel design, library preparation, and sequencing reactions were performed using the Ion AmpliSeq technology. Pathogenic variants were detected in 16 genes in 245 patients (22%), including 186 (17%) and 59 (5%) dominant and recessive cases, respectively. Results confirmed that OPA1 variants are responsible for the majority of dominant IONs, whereas ACO2 and WFS1 variants are also frequently involved in both dominant and recessive forms of ION. All pathogenic variants were found in genes encoding proteins involved in the mitochondrial function, highlighting the importance of mitochondria in the survival of retinal ganglion cells. |
format | Online Article Text |
id | pubmed-8027346 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-80273462021-04-09 Use of Next-Generation Sequencing for the Molecular Diagnosis of 1,102 Patients With a Autosomal Optic Neuropathy Charif, Majida Bris, Céline Goudenège, David Desquiret-Dumas, Valérie Colin, Estelle Ziegler, Alban Procaccio, Vincent Reynier, Pascal Bonneau, Dominique Lenaers, Guy Amati-Bonneau, Patrizia Front Neurol Neurology Advances in next-generation sequencing (NGS) facilitate the diagnosis of genetic disorders. To evaluate its use for the molecular diagnosis of inherited optic neuropathy (ION), a blinding disease caused by the degeneration of retinal ganglion cells, we performed genetic analysis using targeted NGS of 22 already known and candidate genes in a cohort of 1,102 affected individuals. The panel design, library preparation, and sequencing reactions were performed using the Ion AmpliSeq technology. Pathogenic variants were detected in 16 genes in 245 patients (22%), including 186 (17%) and 59 (5%) dominant and recessive cases, respectively. Results confirmed that OPA1 variants are responsible for the majority of dominant IONs, whereas ACO2 and WFS1 variants are also frequently involved in both dominant and recessive forms of ION. All pathogenic variants were found in genes encoding proteins involved in the mitochondrial function, highlighting the importance of mitochondria in the survival of retinal ganglion cells. Frontiers Media S.A. 2021-03-25 /pmc/articles/PMC8027346/ /pubmed/33841295 http://dx.doi.org/10.3389/fneur.2021.602979 Text en Copyright © 2021 Charif, Bris, Goudenège, Desquiret-Dumas, Colin, Ziegler, Procaccio, Reynier, Bonneau, Lenaers and Amati-Bonneau. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neurology Charif, Majida Bris, Céline Goudenège, David Desquiret-Dumas, Valérie Colin, Estelle Ziegler, Alban Procaccio, Vincent Reynier, Pascal Bonneau, Dominique Lenaers, Guy Amati-Bonneau, Patrizia Use of Next-Generation Sequencing for the Molecular Diagnosis of 1,102 Patients With a Autosomal Optic Neuropathy |
title | Use of Next-Generation Sequencing for the Molecular Diagnosis of 1,102 Patients With a Autosomal Optic Neuropathy |
title_full | Use of Next-Generation Sequencing for the Molecular Diagnosis of 1,102 Patients With a Autosomal Optic Neuropathy |
title_fullStr | Use of Next-Generation Sequencing for the Molecular Diagnosis of 1,102 Patients With a Autosomal Optic Neuropathy |
title_full_unstemmed | Use of Next-Generation Sequencing for the Molecular Diagnosis of 1,102 Patients With a Autosomal Optic Neuropathy |
title_short | Use of Next-Generation Sequencing for the Molecular Diagnosis of 1,102 Patients With a Autosomal Optic Neuropathy |
title_sort | use of next-generation sequencing for the molecular diagnosis of 1,102 patients with a autosomal optic neuropathy |
topic | Neurology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8027346/ https://www.ncbi.nlm.nih.gov/pubmed/33841295 http://dx.doi.org/10.3389/fneur.2021.602979 |
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