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A new reduced-morphology model for CA1 pyramidal cells and its validation and comparison with other models using HippoUnit
Modeling long-term neuronal dynamics may require running long-lasting simulations. Such simulations are computationally expensive, and therefore it is advantageous to use simplified models that sufficiently reproduce the real neuronal properties. Reducing the complexity of the neuronal dendritic tre...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8027802/ https://www.ncbi.nlm.nih.gov/pubmed/33828151 http://dx.doi.org/10.1038/s41598-021-87002-7 |
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author | Tomko, Matus Benuskova, Lubica Jedlicka, Peter |
author_facet | Tomko, Matus Benuskova, Lubica Jedlicka, Peter |
author_sort | Tomko, Matus |
collection | PubMed |
description | Modeling long-term neuronal dynamics may require running long-lasting simulations. Such simulations are computationally expensive, and therefore it is advantageous to use simplified models that sufficiently reproduce the real neuronal properties. Reducing the complexity of the neuronal dendritic tree is one option. Therefore, we have developed a new reduced-morphology model of the rat CA1 pyramidal cell which retains major dendritic branch classes. To validate our model with experimental data, we used HippoUnit, a recently established standardized test suite for CA1 pyramidal cell models. The HippoUnit allowed us to systematically evaluate the somatic and dendritic properties of the model and compare them to models publicly available in the ModelDB database. Our model reproduced (1) somatic spiking properties, (2) somatic depolarization block, (3) EPSP attenuation, (4) action potential backpropagation, and (5) synaptic integration at oblique dendrites of CA1 neurons. The overall performance of the model in these tests achieved higher biological accuracy compared to other tested models. We conclude that, due to its realistic biophysics and low morphological complexity, our model captures key physiological features of CA1 pyramidal neurons and shortens computational time, respectively. Thus, the validated reduced-morphology model can be used for computationally demanding simulations as a substitute for more complex models. |
format | Online Article Text |
id | pubmed-8027802 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-80278022021-04-08 A new reduced-morphology model for CA1 pyramidal cells and its validation and comparison with other models using HippoUnit Tomko, Matus Benuskova, Lubica Jedlicka, Peter Sci Rep Article Modeling long-term neuronal dynamics may require running long-lasting simulations. Such simulations are computationally expensive, and therefore it is advantageous to use simplified models that sufficiently reproduce the real neuronal properties. Reducing the complexity of the neuronal dendritic tree is one option. Therefore, we have developed a new reduced-morphology model of the rat CA1 pyramidal cell which retains major dendritic branch classes. To validate our model with experimental data, we used HippoUnit, a recently established standardized test suite for CA1 pyramidal cell models. The HippoUnit allowed us to systematically evaluate the somatic and dendritic properties of the model and compare them to models publicly available in the ModelDB database. Our model reproduced (1) somatic spiking properties, (2) somatic depolarization block, (3) EPSP attenuation, (4) action potential backpropagation, and (5) synaptic integration at oblique dendrites of CA1 neurons. The overall performance of the model in these tests achieved higher biological accuracy compared to other tested models. We conclude that, due to its realistic biophysics and low morphological complexity, our model captures key physiological features of CA1 pyramidal neurons and shortens computational time, respectively. Thus, the validated reduced-morphology model can be used for computationally demanding simulations as a substitute for more complex models. Nature Publishing Group UK 2021-04-07 /pmc/articles/PMC8027802/ /pubmed/33828151 http://dx.doi.org/10.1038/s41598-021-87002-7 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Tomko, Matus Benuskova, Lubica Jedlicka, Peter A new reduced-morphology model for CA1 pyramidal cells and its validation and comparison with other models using HippoUnit |
title | A new reduced-morphology model for CA1 pyramidal cells and its validation and comparison with other models using HippoUnit |
title_full | A new reduced-morphology model for CA1 pyramidal cells and its validation and comparison with other models using HippoUnit |
title_fullStr | A new reduced-morphology model for CA1 pyramidal cells and its validation and comparison with other models using HippoUnit |
title_full_unstemmed | A new reduced-morphology model for CA1 pyramidal cells and its validation and comparison with other models using HippoUnit |
title_short | A new reduced-morphology model for CA1 pyramidal cells and its validation and comparison with other models using HippoUnit |
title_sort | new reduced-morphology model for ca1 pyramidal cells and its validation and comparison with other models using hippounit |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8027802/ https://www.ncbi.nlm.nih.gov/pubmed/33828151 http://dx.doi.org/10.1038/s41598-021-87002-7 |
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