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Development of ReaxFF Reactive Force Field for Aqueous Iron–Sulfur Clusters with Applications to Stability and Reactivity in Water
[Image: see text] Iron–sulfur clusters serve unique roles in biochemistry, geochemistry, and renewable energy technologies. However, a full theoretical understanding of their structures and properties is still lacking. To facilitate large-scale reactive molecular dynamics simulations of iron–sulfur...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8028049/ https://www.ncbi.nlm.nih.gov/pubmed/33617718 http://dx.doi.org/10.1021/acs.jcim.0c01292 |
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author | Moerman, Evgeny Furman, David Wales, David J. |
author_facet | Moerman, Evgeny Furman, David Wales, David J. |
author_sort | Moerman, Evgeny |
collection | PubMed |
description | [Image: see text] Iron–sulfur clusters serve unique roles in biochemistry, geochemistry, and renewable energy technologies. However, a full theoretical understanding of their structures and properties is still lacking. To facilitate large-scale reactive molecular dynamics simulations of iron–sulfur clusters in aqueous environments, a ReaxFF reactive force field is developed, based on an extensive set of quantum chemical calculations. This force field compares favorably with the reference calculations on gas-phase species and significantly improves on a previous ReaxFF parametrization. We employ the new potential to study the stability and reactivity of iron–sulfur clusters in explicit water with constant-temperature reactive molecular dynamics. The aqueous species exhibit a dynamic, temperature-dependent behavior, in good agreement with previous much more costly ab initio simulations. |
format | Online Article Text |
id | pubmed-8028049 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-80280492021-04-08 Development of ReaxFF Reactive Force Field for Aqueous Iron–Sulfur Clusters with Applications to Stability and Reactivity in Water Moerman, Evgeny Furman, David Wales, David J. J Chem Inf Model [Image: see text] Iron–sulfur clusters serve unique roles in biochemistry, geochemistry, and renewable energy technologies. However, a full theoretical understanding of their structures and properties is still lacking. To facilitate large-scale reactive molecular dynamics simulations of iron–sulfur clusters in aqueous environments, a ReaxFF reactive force field is developed, based on an extensive set of quantum chemical calculations. This force field compares favorably with the reference calculations on gas-phase species and significantly improves on a previous ReaxFF parametrization. We employ the new potential to study the stability and reactivity of iron–sulfur clusters in explicit water with constant-temperature reactive molecular dynamics. The aqueous species exhibit a dynamic, temperature-dependent behavior, in good agreement with previous much more costly ab initio simulations. American Chemical Society 2021-02-22 2021-03-22 /pmc/articles/PMC8028049/ /pubmed/33617718 http://dx.doi.org/10.1021/acs.jcim.0c01292 Text en © 2021 The Authors. Published by American Chemical Society Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Moerman, Evgeny Furman, David Wales, David J. Development of ReaxFF Reactive Force Field for Aqueous Iron–Sulfur Clusters with Applications to Stability and Reactivity in Water |
title | Development of ReaxFF Reactive Force Field for Aqueous
Iron–Sulfur Clusters with Applications to Stability and Reactivity
in Water |
title_full | Development of ReaxFF Reactive Force Field for Aqueous
Iron–Sulfur Clusters with Applications to Stability and Reactivity
in Water |
title_fullStr | Development of ReaxFF Reactive Force Field for Aqueous
Iron–Sulfur Clusters with Applications to Stability and Reactivity
in Water |
title_full_unstemmed | Development of ReaxFF Reactive Force Field for Aqueous
Iron–Sulfur Clusters with Applications to Stability and Reactivity
in Water |
title_short | Development of ReaxFF Reactive Force Field for Aqueous
Iron–Sulfur Clusters with Applications to Stability and Reactivity
in Water |
title_sort | development of reaxff reactive force field for aqueous
iron–sulfur clusters with applications to stability and reactivity
in water |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8028049/ https://www.ncbi.nlm.nih.gov/pubmed/33617718 http://dx.doi.org/10.1021/acs.jcim.0c01292 |
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