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Theoretical Characterization of the Reduction Potentials of Nucleic Acids in Solution
[Image: see text] Here, we present the theoretical–computational modeling of the oxidation properties of four DNA nucleosides and nucleotides and a set of dinucleotides in solutions. Our estimates of the vertical ionization energies and reduction potentials, close to the corresponding experimental d...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8028051/ https://www.ncbi.nlm.nih.gov/pubmed/33621084 http://dx.doi.org/10.1021/acs.jctc.0c00728 |
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author | D’Annibale, Valeria Nardi, Alessandro Nicola Amadei, Andrea D’Abramo, Marco |
author_facet | D’Annibale, Valeria Nardi, Alessandro Nicola Amadei, Andrea D’Abramo, Marco |
author_sort | D’Annibale, Valeria |
collection | PubMed |
description | [Image: see text] Here, we present the theoretical–computational modeling of the oxidation properties of four DNA nucleosides and nucleotides and a set of dinucleotides in solutions. Our estimates of the vertical ionization energies and reduction potentials, close to the corresponding experimental data, show that an accurate calculation of the molecular electronic properties in solutions requires a proper treatment of the effect of the environment. In particular, we found that the effect of the environment is to stabilize the oxidized state of the nucleobases resulting in a remarkable reduction—up to 6.6 eV—of the energy with respect to the gas phase. Our estimates of the aqueous and gas-phase vertical ionization energies, in good agreement with photoelectron spectroscopy experiments, also show that the effect on the reduction potential of the phosphate group and of the additional nucleotide in dinucleotides is rather limited. |
format | Online Article Text |
id | pubmed-8028051 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-80280512021-04-08 Theoretical Characterization of the Reduction Potentials of Nucleic Acids in Solution D’Annibale, Valeria Nardi, Alessandro Nicola Amadei, Andrea D’Abramo, Marco J Chem Theory Comput [Image: see text] Here, we present the theoretical–computational modeling of the oxidation properties of four DNA nucleosides and nucleotides and a set of dinucleotides in solutions. Our estimates of the vertical ionization energies and reduction potentials, close to the corresponding experimental data, show that an accurate calculation of the molecular electronic properties in solutions requires a proper treatment of the effect of the environment. In particular, we found that the effect of the environment is to stabilize the oxidized state of the nucleobases resulting in a remarkable reduction—up to 6.6 eV—of the energy with respect to the gas phase. Our estimates of the aqueous and gas-phase vertical ionization energies, in good agreement with photoelectron spectroscopy experiments, also show that the effect on the reduction potential of the phosphate group and of the additional nucleotide in dinucleotides is rather limited. American Chemical Society 2021-02-23 2021-03-09 /pmc/articles/PMC8028051/ /pubmed/33621084 http://dx.doi.org/10.1021/acs.jctc.0c00728 Text en © 2021 The Authors. Published by American Chemical Society Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | D’Annibale, Valeria Nardi, Alessandro Nicola Amadei, Andrea D’Abramo, Marco Theoretical Characterization of the Reduction Potentials of Nucleic Acids in Solution |
title | Theoretical Characterization of the Reduction Potentials
of Nucleic Acids in Solution |
title_full | Theoretical Characterization of the Reduction Potentials
of Nucleic Acids in Solution |
title_fullStr | Theoretical Characterization of the Reduction Potentials
of Nucleic Acids in Solution |
title_full_unstemmed | Theoretical Characterization of the Reduction Potentials
of Nucleic Acids in Solution |
title_short | Theoretical Characterization of the Reduction Potentials
of Nucleic Acids in Solution |
title_sort | theoretical characterization of the reduction potentials
of nucleic acids in solution |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8028051/ https://www.ncbi.nlm.nih.gov/pubmed/33621084 http://dx.doi.org/10.1021/acs.jctc.0c00728 |
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