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Theoretical Characterization of the Reduction Potentials of Nucleic Acids in Solution

[Image: see text] Here, we present the theoretical–computational modeling of the oxidation properties of four DNA nucleosides and nucleotides and a set of dinucleotides in solutions. Our estimates of the vertical ionization energies and reduction potentials, close to the corresponding experimental d...

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Autores principales: D’Annibale, Valeria, Nardi, Alessandro Nicola, Amadei, Andrea, D’Abramo, Marco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2021
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8028051/
https://www.ncbi.nlm.nih.gov/pubmed/33621084
http://dx.doi.org/10.1021/acs.jctc.0c00728
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author D’Annibale, Valeria
Nardi, Alessandro Nicola
Amadei, Andrea
D’Abramo, Marco
author_facet D’Annibale, Valeria
Nardi, Alessandro Nicola
Amadei, Andrea
D’Abramo, Marco
author_sort D’Annibale, Valeria
collection PubMed
description [Image: see text] Here, we present the theoretical–computational modeling of the oxidation properties of four DNA nucleosides and nucleotides and a set of dinucleotides in solutions. Our estimates of the vertical ionization energies and reduction potentials, close to the corresponding experimental data, show that an accurate calculation of the molecular electronic properties in solutions requires a proper treatment of the effect of the environment. In particular, we found that the effect of the environment is to stabilize the oxidized state of the nucleobases resulting in a remarkable reduction—up to 6.6 eV—of the energy with respect to the gas phase. Our estimates of the aqueous and gas-phase vertical ionization energies, in good agreement with photoelectron spectroscopy experiments, also show that the effect on the reduction potential of the phosphate group and of the additional nucleotide in dinucleotides is rather limited.
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spelling pubmed-80280512021-04-08 Theoretical Characterization of the Reduction Potentials of Nucleic Acids in Solution D’Annibale, Valeria Nardi, Alessandro Nicola Amadei, Andrea D’Abramo, Marco J Chem Theory Comput [Image: see text] Here, we present the theoretical–computational modeling of the oxidation properties of four DNA nucleosides and nucleotides and a set of dinucleotides in solutions. Our estimates of the vertical ionization energies and reduction potentials, close to the corresponding experimental data, show that an accurate calculation of the molecular electronic properties in solutions requires a proper treatment of the effect of the environment. In particular, we found that the effect of the environment is to stabilize the oxidized state of the nucleobases resulting in a remarkable reduction—up to 6.6 eV—of the energy with respect to the gas phase. Our estimates of the aqueous and gas-phase vertical ionization energies, in good agreement with photoelectron spectroscopy experiments, also show that the effect on the reduction potential of the phosphate group and of the additional nucleotide in dinucleotides is rather limited. American Chemical Society 2021-02-23 2021-03-09 /pmc/articles/PMC8028051/ /pubmed/33621084 http://dx.doi.org/10.1021/acs.jctc.0c00728 Text en © 2021 The Authors. Published by American Chemical Society Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle D’Annibale, Valeria
Nardi, Alessandro Nicola
Amadei, Andrea
D’Abramo, Marco
Theoretical Characterization of the Reduction Potentials of Nucleic Acids in Solution
title Theoretical Characterization of the Reduction Potentials of Nucleic Acids in Solution
title_full Theoretical Characterization of the Reduction Potentials of Nucleic Acids in Solution
title_fullStr Theoretical Characterization of the Reduction Potentials of Nucleic Acids in Solution
title_full_unstemmed Theoretical Characterization of the Reduction Potentials of Nucleic Acids in Solution
title_short Theoretical Characterization of the Reduction Potentials of Nucleic Acids in Solution
title_sort theoretical characterization of the reduction potentials of nucleic acids in solution
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8028051/
https://www.ncbi.nlm.nih.gov/pubmed/33621084
http://dx.doi.org/10.1021/acs.jctc.0c00728
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