Cargando…

Expanding molecular diagnostic capacity for COVID-19 in Ethiopia: operational implications, challenges and lessons learnt

Efforts towards slowing down coronavirus (COVID-19) transmission and reducing mortality have focused on timely case detection, isolation and treatment. Availability of laboratory COVID-19 testing capacity using reverse-transcriptase polymerase chain reaction (RT-PCR) was essential for case detection...

Descripción completa

Detalles Bibliográficos
Autores principales: Kebede, Adisu, Lanyero, Betty, Beyene, Berhane, Mandalia, Mayur Lalji, Melese, Daniel, Girmachew, Feven, Mekonnen, Adamu, Ayana, Gonfa, Yemanebirhan, Nebiyou, Hailu, Getnet, Asrat, Habtamu, Nurahmed, Negash, Gashu, Andargachew, Eshetu, Kirubel, Assefa, Zewdu, Abayneh, Aschalew, Musa, Emmanuel, Abate, Ebba
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The African Field Epidemiology Network 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8028356/
https://www.ncbi.nlm.nih.gov/pubmed/33889234
http://dx.doi.org/10.11604/pamj.2021.38.68.27501
_version_ 1783675960524013568
author Kebede, Adisu
Lanyero, Betty
Beyene, Berhane
Mandalia, Mayur Lalji
Melese, Daniel
Girmachew, Feven
Mekonnen, Adamu
Ayana, Gonfa
Yemanebirhan, Nebiyou
Hailu, Getnet
Asrat, Habtamu
Nurahmed, Negash
Gashu, Andargachew
Eshetu, Kirubel
Assefa, Zewdu
Abayneh, Aschalew
Musa, Emmanuel
Abate, Ebba
author_facet Kebede, Adisu
Lanyero, Betty
Beyene, Berhane
Mandalia, Mayur Lalji
Melese, Daniel
Girmachew, Feven
Mekonnen, Adamu
Ayana, Gonfa
Yemanebirhan, Nebiyou
Hailu, Getnet
Asrat, Habtamu
Nurahmed, Negash
Gashu, Andargachew
Eshetu, Kirubel
Assefa, Zewdu
Abayneh, Aschalew
Musa, Emmanuel
Abate, Ebba
author_sort Kebede, Adisu
collection PubMed
description Efforts towards slowing down coronavirus (COVID-19) transmission and reducing mortality have focused on timely case detection, isolation and treatment. Availability of laboratory COVID-19 testing capacity using reverse-transcriptase polymerase chain reaction (RT-PCR) was essential for case detection. Hence, it was critical to establish and expand this capacity to test for COVID-19 in Ethiopia. To this end, using a three-phrased approach, potential public and private laboratories with RT-PCR technology were assessed, capacitated with trained human resource and equipped as required. These laboratories were verified to conduct COVID-19 testing with quality assurance checks regularly conducted. Within a 10-month period, COVID-19 testing laboratories increased from zero to 65 in all Regional States with the capacity to conduct 18,454 tests per day. The success of this rapid countrywide expansion of laboratory testing capacity for COVID-19 depended on some key operational implications: the strong laboratory coordination network within the country, the use of non-virologic laboratories, investment in capacity building, digitalization of the data for better information management and establishing quality assurance checks. A weak supply chain for laboratory reagents and consumables, differences in the brands of COVID-19 test kits, frequent breakdowns of the PCR machines and inadequate number of laboratory personnel following the adaption of a 24/7 work schedule were some of the challenges experienced during the process of laboratory expansion. Overall, we learn that multisectoral involvement of laboratories from non-health sectors, an effective supply chain system with an insight into the promotion of local production of laboratory supplies were critical during the laboratory expansion for COVID-19 testing. The consistent support from WHO and other implementing partners to Member States is needed in building the capacity of laboratories across different diagnostic capabilities in line with International Health Regulations. This will enable efficient adaptation to respond to future public health emergencies.
format Online
Article
Text
id pubmed-8028356
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher The African Field Epidemiology Network
record_format MEDLINE/PubMed
spelling pubmed-80283562021-04-21 Expanding molecular diagnostic capacity for COVID-19 in Ethiopia: operational implications, challenges and lessons learnt Kebede, Adisu Lanyero, Betty Beyene, Berhane Mandalia, Mayur Lalji Melese, Daniel Girmachew, Feven Mekonnen, Adamu Ayana, Gonfa Yemanebirhan, Nebiyou Hailu, Getnet Asrat, Habtamu Nurahmed, Negash Gashu, Andargachew Eshetu, Kirubel Assefa, Zewdu Abayneh, Aschalew Musa, Emmanuel Abate, Ebba Pan Afr Med J Perspectives Efforts towards slowing down coronavirus (COVID-19) transmission and reducing mortality have focused on timely case detection, isolation and treatment. Availability of laboratory COVID-19 testing capacity using reverse-transcriptase polymerase chain reaction (RT-PCR) was essential for case detection. Hence, it was critical to establish and expand this capacity to test for COVID-19 in Ethiopia. To this end, using a three-phrased approach, potential public and private laboratories with RT-PCR technology were assessed, capacitated with trained human resource and equipped as required. These laboratories were verified to conduct COVID-19 testing with quality assurance checks regularly conducted. Within a 10-month period, COVID-19 testing laboratories increased from zero to 65 in all Regional States with the capacity to conduct 18,454 tests per day. The success of this rapid countrywide expansion of laboratory testing capacity for COVID-19 depended on some key operational implications: the strong laboratory coordination network within the country, the use of non-virologic laboratories, investment in capacity building, digitalization of the data for better information management and establishing quality assurance checks. A weak supply chain for laboratory reagents and consumables, differences in the brands of COVID-19 test kits, frequent breakdowns of the PCR machines and inadequate number of laboratory personnel following the adaption of a 24/7 work schedule were some of the challenges experienced during the process of laboratory expansion. Overall, we learn that multisectoral involvement of laboratories from non-health sectors, an effective supply chain system with an insight into the promotion of local production of laboratory supplies were critical during the laboratory expansion for COVID-19 testing. The consistent support from WHO and other implementing partners to Member States is needed in building the capacity of laboratories across different diagnostic capabilities in line with International Health Regulations. This will enable efficient adaptation to respond to future public health emergencies. The African Field Epidemiology Network 2021-01-20 /pmc/articles/PMC8028356/ /pubmed/33889234 http://dx.doi.org/10.11604/pamj.2021.38.68.27501 Text en Copyright: Adisu Kebede et al. https://creativecommons.org/licenses/by/4.0/The Pan African Medical Journal (ISSN: 1937-8688). This is an Open Access article distributed under the terms of the Creative Commons Attribution International 4.0 License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Perspectives
Kebede, Adisu
Lanyero, Betty
Beyene, Berhane
Mandalia, Mayur Lalji
Melese, Daniel
Girmachew, Feven
Mekonnen, Adamu
Ayana, Gonfa
Yemanebirhan, Nebiyou
Hailu, Getnet
Asrat, Habtamu
Nurahmed, Negash
Gashu, Andargachew
Eshetu, Kirubel
Assefa, Zewdu
Abayneh, Aschalew
Musa, Emmanuel
Abate, Ebba
Expanding molecular diagnostic capacity for COVID-19 in Ethiopia: operational implications, challenges and lessons learnt
title Expanding molecular diagnostic capacity for COVID-19 in Ethiopia: operational implications, challenges and lessons learnt
title_full Expanding molecular diagnostic capacity for COVID-19 in Ethiopia: operational implications, challenges and lessons learnt
title_fullStr Expanding molecular diagnostic capacity for COVID-19 in Ethiopia: operational implications, challenges and lessons learnt
title_full_unstemmed Expanding molecular diagnostic capacity for COVID-19 in Ethiopia: operational implications, challenges and lessons learnt
title_short Expanding molecular diagnostic capacity for COVID-19 in Ethiopia: operational implications, challenges and lessons learnt
title_sort expanding molecular diagnostic capacity for covid-19 in ethiopia: operational implications, challenges and lessons learnt
topic Perspectives
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8028356/
https://www.ncbi.nlm.nih.gov/pubmed/33889234
http://dx.doi.org/10.11604/pamj.2021.38.68.27501
work_keys_str_mv AT kebedeadisu expandingmoleculardiagnosticcapacityforcovid19inethiopiaoperationalimplicationschallengesandlessonslearnt
AT lanyerobetty expandingmoleculardiagnosticcapacityforcovid19inethiopiaoperationalimplicationschallengesandlessonslearnt
AT beyeneberhane expandingmoleculardiagnosticcapacityforcovid19inethiopiaoperationalimplicationschallengesandlessonslearnt
AT mandaliamayurlalji expandingmoleculardiagnosticcapacityforcovid19inethiopiaoperationalimplicationschallengesandlessonslearnt
AT melesedaniel expandingmoleculardiagnosticcapacityforcovid19inethiopiaoperationalimplicationschallengesandlessonslearnt
AT girmachewfeven expandingmoleculardiagnosticcapacityforcovid19inethiopiaoperationalimplicationschallengesandlessonslearnt
AT mekonnenadamu expandingmoleculardiagnosticcapacityforcovid19inethiopiaoperationalimplicationschallengesandlessonslearnt
AT ayanagonfa expandingmoleculardiagnosticcapacityforcovid19inethiopiaoperationalimplicationschallengesandlessonslearnt
AT yemanebirhannebiyou expandingmoleculardiagnosticcapacityforcovid19inethiopiaoperationalimplicationschallengesandlessonslearnt
AT hailugetnet expandingmoleculardiagnosticcapacityforcovid19inethiopiaoperationalimplicationschallengesandlessonslearnt
AT asrathabtamu expandingmoleculardiagnosticcapacityforcovid19inethiopiaoperationalimplicationschallengesandlessonslearnt
AT nurahmednegash expandingmoleculardiagnosticcapacityforcovid19inethiopiaoperationalimplicationschallengesandlessonslearnt
AT gashuandargachew expandingmoleculardiagnosticcapacityforcovid19inethiopiaoperationalimplicationschallengesandlessonslearnt
AT eshetukirubel expandingmoleculardiagnosticcapacityforcovid19inethiopiaoperationalimplicationschallengesandlessonslearnt
AT assefazewdu expandingmoleculardiagnosticcapacityforcovid19inethiopiaoperationalimplicationschallengesandlessonslearnt
AT abaynehaschalew expandingmoleculardiagnosticcapacityforcovid19inethiopiaoperationalimplicationschallengesandlessonslearnt
AT musaemmanuel expandingmoleculardiagnosticcapacityforcovid19inethiopiaoperationalimplicationschallengesandlessonslearnt
AT abateebba expandingmoleculardiagnosticcapacityforcovid19inethiopiaoperationalimplicationschallengesandlessonslearnt