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Forecasting COVID-19 cases based on a parameter-varying stochastic SIR model

We address the prediction of the number of new cases and deaths for the coronavirus disease 2019 (COVID-19) over a future horizon from historical data (forecasting). We use a model-based approach based on a stochastic Susceptible–Infections–Removed (SIR) model with time-varying parameters, which cap...

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Autores principales: Hespanha, João P., Chinchilla, Raphael, Costa, Ramon R., Erdal, Murat K., Yang, Guosong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Published by Elsevier Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8030732/
https://www.ncbi.nlm.nih.gov/pubmed/33850441
http://dx.doi.org/10.1016/j.arcontrol.2021.03.008
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author Hespanha, João P.
Chinchilla, Raphael
Costa, Ramon R.
Erdal, Murat K.
Yang, Guosong
author_facet Hespanha, João P.
Chinchilla, Raphael
Costa, Ramon R.
Erdal, Murat K.
Yang, Guosong
author_sort Hespanha, João P.
collection PubMed
description We address the prediction of the number of new cases and deaths for the coronavirus disease 2019 (COVID-19) over a future horizon from historical data (forecasting). We use a model-based approach based on a stochastic Susceptible–Infections–Removed (SIR) model with time-varying parameters, which captures the evolution of the disease dynamics in response to changes in social behavior, non-pharmaceutical interventions, and testing rates. We show that, in the presence of asymptomatic cases, such model includes internal parameters and states that cannot be uniquely identified solely on the basis of measurements of new cases and deaths, but this does not preclude the construction of reliable forecasts for future values of these measurements. Such forecasts and associated confidence intervals can be computed using an iterative algorithm based on nonlinear optimization solvers, without the need for Monte Carlo sampling. Our results have been validated on an extensive COVID-19 dataset covering the period from March through December 2020 on 144 regions around the globe.
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spelling pubmed-80307322021-04-09 Forecasting COVID-19 cases based on a parameter-varying stochastic SIR model Hespanha, João P. Chinchilla, Raphael Costa, Ramon R. Erdal, Murat K. Yang, Guosong Annu Rev Control Article We address the prediction of the number of new cases and deaths for the coronavirus disease 2019 (COVID-19) over a future horizon from historical data (forecasting). We use a model-based approach based on a stochastic Susceptible–Infections–Removed (SIR) model with time-varying parameters, which captures the evolution of the disease dynamics in response to changes in social behavior, non-pharmaceutical interventions, and testing rates. We show that, in the presence of asymptomatic cases, such model includes internal parameters and states that cannot be uniquely identified solely on the basis of measurements of new cases and deaths, but this does not preclude the construction of reliable forecasts for future values of these measurements. Such forecasts and associated confidence intervals can be computed using an iterative algorithm based on nonlinear optimization solvers, without the need for Monte Carlo sampling. Our results have been validated on an extensive COVID-19 dataset covering the period from March through December 2020 on 144 regions around the globe. Published by Elsevier Ltd. 2021 2021-04-08 /pmc/articles/PMC8030732/ /pubmed/33850441 http://dx.doi.org/10.1016/j.arcontrol.2021.03.008 Text en © 2021 Published by Elsevier Ltd. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Hespanha, João P.
Chinchilla, Raphael
Costa, Ramon R.
Erdal, Murat K.
Yang, Guosong
Forecasting COVID-19 cases based on a parameter-varying stochastic SIR model
title Forecasting COVID-19 cases based on a parameter-varying stochastic SIR model
title_full Forecasting COVID-19 cases based on a parameter-varying stochastic SIR model
title_fullStr Forecasting COVID-19 cases based on a parameter-varying stochastic SIR model
title_full_unstemmed Forecasting COVID-19 cases based on a parameter-varying stochastic SIR model
title_short Forecasting COVID-19 cases based on a parameter-varying stochastic SIR model
title_sort forecasting covid-19 cases based on a parameter-varying stochastic sir model
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8030732/
https://www.ncbi.nlm.nih.gov/pubmed/33850441
http://dx.doi.org/10.1016/j.arcontrol.2021.03.008
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