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Characterization of the complete chloroplast genome of China Viburnum burejaeticum Regel et Herd and intra-species diversity
Viburnum burejaeticum Regel et Herd is widely cultivated in botanical gardens. However, as a member of Adoxaceae, few studies have been carried out on its phylogenetic relationship with other family members. Here we report the first complete chloroplast (cp) genome sequence of V. burejaeticum collec...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8032331/ https://www.ncbi.nlm.nih.gov/pubmed/33889747 http://dx.doi.org/10.1080/23802359.2021.1907810 |
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author | Gu, Lei Wang, Guangyi Weng, Qingbei |
author_facet | Gu, Lei Wang, Guangyi Weng, Qingbei |
author_sort | Gu, Lei |
collection | PubMed |
description | Viburnum burejaeticum Regel et Herd is widely cultivated in botanical gardens. However, as a member of Adoxaceae, few studies have been carried out on its phylogenetic relationship with other family members. Here we report the first complete chloroplast (cp) genome sequence of V. burejaeticum collected from China. The circular cp genome is 158,381 bp in size, including a large single-copy (LSC) region of 87,067 bp and a small single-copy (SSC) region of 18,212 bp, which were separated by two inverted repeat (IR) regions (26,551 bp each). A total of 126 genes were annotated, including 8 ribosomal RNAs (rRNAs), 36 transfer RNAs (tRNAs), and 82 protein-coding genes (PCGs). The sequence comparison of two V. burejaeticum collected from Korea and China revealed 101 single nucleotide polymorphisms (SNPs) and 16 insertions/deletions (InDels). In addition, maximum-likelihood (ML) phylogenetic analysis indicated V. burejaeticum species collected in Korea and China are clustered together. This study provides useful information for future genetic study of V. burejaeticum. |
format | Online Article Text |
id | pubmed-8032331 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-80323312021-04-21 Characterization of the complete chloroplast genome of China Viburnum burejaeticum Regel et Herd and intra-species diversity Gu, Lei Wang, Guangyi Weng, Qingbei Mitochondrial DNA B Resour Mitogenome Announcement Viburnum burejaeticum Regel et Herd is widely cultivated in botanical gardens. However, as a member of Adoxaceae, few studies have been carried out on its phylogenetic relationship with other family members. Here we report the first complete chloroplast (cp) genome sequence of V. burejaeticum collected from China. The circular cp genome is 158,381 bp in size, including a large single-copy (LSC) region of 87,067 bp and a small single-copy (SSC) region of 18,212 bp, which were separated by two inverted repeat (IR) regions (26,551 bp each). A total of 126 genes were annotated, including 8 ribosomal RNAs (rRNAs), 36 transfer RNAs (tRNAs), and 82 protein-coding genes (PCGs). The sequence comparison of two V. burejaeticum collected from Korea and China revealed 101 single nucleotide polymorphisms (SNPs) and 16 insertions/deletions (InDels). In addition, maximum-likelihood (ML) phylogenetic analysis indicated V. burejaeticum species collected in Korea and China are clustered together. This study provides useful information for future genetic study of V. burejaeticum. Taylor & Francis 2021-04-06 /pmc/articles/PMC8032331/ /pubmed/33889747 http://dx.doi.org/10.1080/23802359.2021.1907810 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Gu, Lei Wang, Guangyi Weng, Qingbei Characterization of the complete chloroplast genome of China Viburnum burejaeticum Regel et Herd and intra-species diversity |
title | Characterization of the complete chloroplast genome of China Viburnum burejaeticum Regel et Herd and intra-species diversity |
title_full | Characterization of the complete chloroplast genome of China Viburnum burejaeticum Regel et Herd and intra-species diversity |
title_fullStr | Characterization of the complete chloroplast genome of China Viburnum burejaeticum Regel et Herd and intra-species diversity |
title_full_unstemmed | Characterization of the complete chloroplast genome of China Viburnum burejaeticum Regel et Herd and intra-species diversity |
title_short | Characterization of the complete chloroplast genome of China Viburnum burejaeticum Regel et Herd and intra-species diversity |
title_sort | characterization of the complete chloroplast genome of china viburnum burejaeticum regel et herd and intra-species diversity |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8032331/ https://www.ncbi.nlm.nih.gov/pubmed/33889747 http://dx.doi.org/10.1080/23802359.2021.1907810 |
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