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Digital image processing to detect subtle motion in stony coral

Coral reef ecosystems support significant biological activities and harbor huge diversity, but they are facing a severe crisis driven by anthropogenic activities and climate change. An important behavioral trait of the coral holobiont is coral motion, which may play an essential role in feeding, com...

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Autores principales: Li, Shuaifeng, Roger, Liza M., Kumar, Lokender, Lewinski, Nastassja A., Klein-Seetharaman, Judith, Gagnon, Alex, Putnam, Hollie M., Yang, Jinkyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8032694/
https://www.ncbi.nlm.nih.gov/pubmed/33833260
http://dx.doi.org/10.1038/s41598-021-85800-7
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author Li, Shuaifeng
Roger, Liza M.
Kumar, Lokender
Lewinski, Nastassja A.
Klein-Seetharaman, Judith
Gagnon, Alex
Putnam, Hollie M.
Yang, Jinkyu
author_facet Li, Shuaifeng
Roger, Liza M.
Kumar, Lokender
Lewinski, Nastassja A.
Klein-Seetharaman, Judith
Gagnon, Alex
Putnam, Hollie M.
Yang, Jinkyu
author_sort Li, Shuaifeng
collection PubMed
description Coral reef ecosystems support significant biological activities and harbor huge diversity, but they are facing a severe crisis driven by anthropogenic activities and climate change. An important behavioral trait of the coral holobiont is coral motion, which may play an essential role in feeding, competition, reproduction, and thus survival and fitness. Therefore, characterizing coral behavior through motion analysis will aid our understanding of basic biological and physical coral functions. However, tissue motion in the stony scleractinian corals that contribute most to coral reef construction are subtle and may be imperceptible to both the human eye and commonly used imaging techniques. Here we propose and apply a systematic approach to quantify and visualize subtle coral motion across a series of light and dark cycles in the scleractinian coral Montipora capricornis. We use digital image correlation and optical flow techniques to quantify and characterize minute coral motions under different light conditions. In addition, as a visualization tool, motion magnification algorithm magnifies coral motions in different frequencies, which explicitly displays the distinctive dynamic modes of coral movement. Specifically, our assessment of displacement, strain, optical flow, and mode shape quantify coral motion under different light conditions, and they all show that M. capricornis exhibits more active motions at night compared to day. Our approach provides an unprecedented insight into micro-scale coral movement and behavior through macro-scale digital imaging, thus offering a useful empirical toolset for the coral research community.
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spelling pubmed-80326942021-04-09 Digital image processing to detect subtle motion in stony coral Li, Shuaifeng Roger, Liza M. Kumar, Lokender Lewinski, Nastassja A. Klein-Seetharaman, Judith Gagnon, Alex Putnam, Hollie M. Yang, Jinkyu Sci Rep Article Coral reef ecosystems support significant biological activities and harbor huge diversity, but they are facing a severe crisis driven by anthropogenic activities and climate change. An important behavioral trait of the coral holobiont is coral motion, which may play an essential role in feeding, competition, reproduction, and thus survival and fitness. Therefore, characterizing coral behavior through motion analysis will aid our understanding of basic biological and physical coral functions. However, tissue motion in the stony scleractinian corals that contribute most to coral reef construction are subtle and may be imperceptible to both the human eye and commonly used imaging techniques. Here we propose and apply a systematic approach to quantify and visualize subtle coral motion across a series of light and dark cycles in the scleractinian coral Montipora capricornis. We use digital image correlation and optical flow techniques to quantify and characterize minute coral motions under different light conditions. In addition, as a visualization tool, motion magnification algorithm magnifies coral motions in different frequencies, which explicitly displays the distinctive dynamic modes of coral movement. Specifically, our assessment of displacement, strain, optical flow, and mode shape quantify coral motion under different light conditions, and they all show that M. capricornis exhibits more active motions at night compared to day. Our approach provides an unprecedented insight into micro-scale coral movement and behavior through macro-scale digital imaging, thus offering a useful empirical toolset for the coral research community. Nature Publishing Group UK 2021-04-08 /pmc/articles/PMC8032694/ /pubmed/33833260 http://dx.doi.org/10.1038/s41598-021-85800-7 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Li, Shuaifeng
Roger, Liza M.
Kumar, Lokender
Lewinski, Nastassja A.
Klein-Seetharaman, Judith
Gagnon, Alex
Putnam, Hollie M.
Yang, Jinkyu
Digital image processing to detect subtle motion in stony coral
title Digital image processing to detect subtle motion in stony coral
title_full Digital image processing to detect subtle motion in stony coral
title_fullStr Digital image processing to detect subtle motion in stony coral
title_full_unstemmed Digital image processing to detect subtle motion in stony coral
title_short Digital image processing to detect subtle motion in stony coral
title_sort digital image processing to detect subtle motion in stony coral
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8032694/
https://www.ncbi.nlm.nih.gov/pubmed/33833260
http://dx.doi.org/10.1038/s41598-021-85800-7
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