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Predicting lung adenocarcinoma prognosis with a novel risk scoring based on platelet-related gene expression
Lung adenocarcinoma is the most common subtype of non-small cell lung cancer, and platelet receptor-related genes are related to its occurrence and progression. A new prognostic indicator based on platelet receptor-related genes was developed with multivariate COX analysis. Prognostic markers based...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8034940/ https://www.ncbi.nlm.nih.gov/pubmed/33619234 http://dx.doi.org/10.18632/aging.202682 |
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author | Zhou, Chengmao Wang, Yongsheng Wang, Ying Lei, Lei Ji, Mu-Huo Zhou, Guoren Xia, Hongping Yang, Jian-Jun |
author_facet | Zhou, Chengmao Wang, Yongsheng Wang, Ying Lei, Lei Ji, Mu-Huo Zhou, Guoren Xia, Hongping Yang, Jian-Jun |
author_sort | Zhou, Chengmao |
collection | PubMed |
description | Lung adenocarcinoma is the most common subtype of non-small cell lung cancer, and platelet receptor-related genes are related to its occurrence and progression. A new prognostic indicator based on platelet receptor-related genes was developed with multivariate COX analysis. Prognostic markers based on platelet-related risk score perform moderately in prognosis prediction. The functional annotation of this risk model in high-risk patients shows that the pathways related to cell cycle, glycolysis and platelet-derived related factors are rich. It is worth noting that somatic mutation analysis shows that TTN and MUC16 have higher mutation burdens in high-risk patients. Moreover, the differential genes of high- and low-risk groups are regulated by copy number variation and miRNA. And we provide a free online nomogram web tool based on clinical factors and the risk score (https://wsxzaq.shinyapps.io/wsxzaq_nomogram/). The score has been verified among three independent external cohorts (GSE13213, GSE68465 and GSE72094), and is still an independent risk factor for lung adenocarcinoma. In addition, among the other 6 cancers, the OS prognosis of high and low-risk groups of PRS is different (P < 0.05). Our research results have screened multiple platelet differential genes with clinical significance and constructed a meaningful prognostic risk score (PRS). |
format | Online Article Text |
id | pubmed-8034940 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Impact Journals |
record_format | MEDLINE/PubMed |
spelling | pubmed-80349402021-04-16 Predicting lung adenocarcinoma prognosis with a novel risk scoring based on platelet-related gene expression Zhou, Chengmao Wang, Yongsheng Wang, Ying Lei, Lei Ji, Mu-Huo Zhou, Guoren Xia, Hongping Yang, Jian-Jun Aging (Albany NY) Research Paper Lung adenocarcinoma is the most common subtype of non-small cell lung cancer, and platelet receptor-related genes are related to its occurrence and progression. A new prognostic indicator based on platelet receptor-related genes was developed with multivariate COX analysis. Prognostic markers based on platelet-related risk score perform moderately in prognosis prediction. The functional annotation of this risk model in high-risk patients shows that the pathways related to cell cycle, glycolysis and platelet-derived related factors are rich. It is worth noting that somatic mutation analysis shows that TTN and MUC16 have higher mutation burdens in high-risk patients. Moreover, the differential genes of high- and low-risk groups are regulated by copy number variation and miRNA. And we provide a free online nomogram web tool based on clinical factors and the risk score (https://wsxzaq.shinyapps.io/wsxzaq_nomogram/). The score has been verified among three independent external cohorts (GSE13213, GSE68465 and GSE72094), and is still an independent risk factor for lung adenocarcinoma. In addition, among the other 6 cancers, the OS prognosis of high and low-risk groups of PRS is different (P < 0.05). Our research results have screened multiple platelet differential genes with clinical significance and constructed a meaningful prognostic risk score (PRS). Impact Journals 2021-02-22 /pmc/articles/PMC8034940/ /pubmed/33619234 http://dx.doi.org/10.18632/aging.202682 Text en Copyright: © 2021 Zhou et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Zhou, Chengmao Wang, Yongsheng Wang, Ying Lei, Lei Ji, Mu-Huo Zhou, Guoren Xia, Hongping Yang, Jian-Jun Predicting lung adenocarcinoma prognosis with a novel risk scoring based on platelet-related gene expression |
title | Predicting lung adenocarcinoma prognosis with a novel risk scoring based on platelet-related gene expression |
title_full | Predicting lung adenocarcinoma prognosis with a novel risk scoring based on platelet-related gene expression |
title_fullStr | Predicting lung adenocarcinoma prognosis with a novel risk scoring based on platelet-related gene expression |
title_full_unstemmed | Predicting lung adenocarcinoma prognosis with a novel risk scoring based on platelet-related gene expression |
title_short | Predicting lung adenocarcinoma prognosis with a novel risk scoring based on platelet-related gene expression |
title_sort | predicting lung adenocarcinoma prognosis with a novel risk scoring based on platelet-related gene expression |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8034940/ https://www.ncbi.nlm.nih.gov/pubmed/33619234 http://dx.doi.org/10.18632/aging.202682 |
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