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Predicting lung adenocarcinoma prognosis with a novel risk scoring based on platelet-related gene expression

Lung adenocarcinoma is the most common subtype of non-small cell lung cancer, and platelet receptor-related genes are related to its occurrence and progression. A new prognostic indicator based on platelet receptor-related genes was developed with multivariate COX analysis. Prognostic markers based...

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Autores principales: Zhou, Chengmao, Wang, Yongsheng, Wang, Ying, Lei, Lei, Ji, Mu-Huo, Zhou, Guoren, Xia, Hongping, Yang, Jian-Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8034940/
https://www.ncbi.nlm.nih.gov/pubmed/33619234
http://dx.doi.org/10.18632/aging.202682
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author Zhou, Chengmao
Wang, Yongsheng
Wang, Ying
Lei, Lei
Ji, Mu-Huo
Zhou, Guoren
Xia, Hongping
Yang, Jian-Jun
author_facet Zhou, Chengmao
Wang, Yongsheng
Wang, Ying
Lei, Lei
Ji, Mu-Huo
Zhou, Guoren
Xia, Hongping
Yang, Jian-Jun
author_sort Zhou, Chengmao
collection PubMed
description Lung adenocarcinoma is the most common subtype of non-small cell lung cancer, and platelet receptor-related genes are related to its occurrence and progression. A new prognostic indicator based on platelet receptor-related genes was developed with multivariate COX analysis. Prognostic markers based on platelet-related risk score perform moderately in prognosis prediction. The functional annotation of this risk model in high-risk patients shows that the pathways related to cell cycle, glycolysis and platelet-derived related factors are rich. It is worth noting that somatic mutation analysis shows that TTN and MUC16 have higher mutation burdens in high-risk patients. Moreover, the differential genes of high- and low-risk groups are regulated by copy number variation and miRNA. And we provide a free online nomogram web tool based on clinical factors and the risk score (https://wsxzaq.shinyapps.io/wsxzaq_nomogram/). The score has been verified among three independent external cohorts (GSE13213, GSE68465 and GSE72094), and is still an independent risk factor for lung adenocarcinoma. In addition, among the other 6 cancers, the OS prognosis of high and low-risk groups of PRS is different (P < 0.05). Our research results have screened multiple platelet differential genes with clinical significance and constructed a meaningful prognostic risk score (PRS).
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spelling pubmed-80349402021-04-16 Predicting lung adenocarcinoma prognosis with a novel risk scoring based on platelet-related gene expression Zhou, Chengmao Wang, Yongsheng Wang, Ying Lei, Lei Ji, Mu-Huo Zhou, Guoren Xia, Hongping Yang, Jian-Jun Aging (Albany NY) Research Paper Lung adenocarcinoma is the most common subtype of non-small cell lung cancer, and platelet receptor-related genes are related to its occurrence and progression. A new prognostic indicator based on platelet receptor-related genes was developed with multivariate COX analysis. Prognostic markers based on platelet-related risk score perform moderately in prognosis prediction. The functional annotation of this risk model in high-risk patients shows that the pathways related to cell cycle, glycolysis and platelet-derived related factors are rich. It is worth noting that somatic mutation analysis shows that TTN and MUC16 have higher mutation burdens in high-risk patients. Moreover, the differential genes of high- and low-risk groups are regulated by copy number variation and miRNA. And we provide a free online nomogram web tool based on clinical factors and the risk score (https://wsxzaq.shinyapps.io/wsxzaq_nomogram/). The score has been verified among three independent external cohorts (GSE13213, GSE68465 and GSE72094), and is still an independent risk factor for lung adenocarcinoma. In addition, among the other 6 cancers, the OS prognosis of high and low-risk groups of PRS is different (P < 0.05). Our research results have screened multiple platelet differential genes with clinical significance and constructed a meaningful prognostic risk score (PRS). Impact Journals 2021-02-22 /pmc/articles/PMC8034940/ /pubmed/33619234 http://dx.doi.org/10.18632/aging.202682 Text en Copyright: © 2021 Zhou et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Zhou, Chengmao
Wang, Yongsheng
Wang, Ying
Lei, Lei
Ji, Mu-Huo
Zhou, Guoren
Xia, Hongping
Yang, Jian-Jun
Predicting lung adenocarcinoma prognosis with a novel risk scoring based on platelet-related gene expression
title Predicting lung adenocarcinoma prognosis with a novel risk scoring based on platelet-related gene expression
title_full Predicting lung adenocarcinoma prognosis with a novel risk scoring based on platelet-related gene expression
title_fullStr Predicting lung adenocarcinoma prognosis with a novel risk scoring based on platelet-related gene expression
title_full_unstemmed Predicting lung adenocarcinoma prognosis with a novel risk scoring based on platelet-related gene expression
title_short Predicting lung adenocarcinoma prognosis with a novel risk scoring based on platelet-related gene expression
title_sort predicting lung adenocarcinoma prognosis with a novel risk scoring based on platelet-related gene expression
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8034940/
https://www.ncbi.nlm.nih.gov/pubmed/33619234
http://dx.doi.org/10.18632/aging.202682
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