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IGF2R circular RNA hsa_circ_0131235 expression in the middle temporal cortex is associated with AD pathology
OBJECTIVE: To identify circular RNAs as candidates for differential expression in the middle temporal (MT) cortex in a well‐characterized cohort with contrasting Alzheimer disease (AD) pathology and cognition. Top screen candidates were assessed for proof of circularity and then quantified by qPCR i...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8035435/ https://www.ncbi.nlm.nih.gov/pubmed/33704916 http://dx.doi.org/10.1002/brb3.2048 |
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author | Bigarré, Inès M. Trombetta, Bianca A. Guo, Yan‐jun Arnold, Steven E. Carlyle, Becky C. |
author_facet | Bigarré, Inès M. Trombetta, Bianca A. Guo, Yan‐jun Arnold, Steven E. Carlyle, Becky C. |
author_sort | Bigarré, Inès M. |
collection | PubMed |
description | OBJECTIVE: To identify circular RNAs as candidates for differential expression in the middle temporal (MT) cortex in a well‐characterized cohort with contrasting Alzheimer disease (AD) pathology and cognition. Top screen candidates were assessed for proof of circularity and then quantified by qPCR in a larger number of samples. METHODS: An initial RNA sequencing screen was performed on n = 20 frozen human tissue samples. Filters were applied to select candidate circular RNAs for further investigation. Frozen human tissue samples were selected for global AD pathology burden and global cognition scores (n = 100). Linear and divergent primers were used to assess circularity using RNaseR digestion. RT‐qPCR was performed to quantify relative hsa_circ_0131235 abundance. RESULTS: Eleven circular RNAs were selected for further investigation. Four candidates produced circular RNA primers with appropriate efficiencies for qPCR. RNaseR treatment and analysis by both basic PCR and qPCR confirmed hsa_circ_0131235 circularity. There was a significant main effect of AD pathology on hsa_circ_0131235 expression. CONCLUSIONS: Elevated hsa_circ_0131235 expression in the MT cortex was significantly associated with AD pathology. |
format | Online Article Text |
id | pubmed-8035435 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-80354352021-04-14 IGF2R circular RNA hsa_circ_0131235 expression in the middle temporal cortex is associated with AD pathology Bigarré, Inès M. Trombetta, Bianca A. Guo, Yan‐jun Arnold, Steven E. Carlyle, Becky C. Brain Behav Original Research OBJECTIVE: To identify circular RNAs as candidates for differential expression in the middle temporal (MT) cortex in a well‐characterized cohort with contrasting Alzheimer disease (AD) pathology and cognition. Top screen candidates were assessed for proof of circularity and then quantified by qPCR in a larger number of samples. METHODS: An initial RNA sequencing screen was performed on n = 20 frozen human tissue samples. Filters were applied to select candidate circular RNAs for further investigation. Frozen human tissue samples were selected for global AD pathology burden and global cognition scores (n = 100). Linear and divergent primers were used to assess circularity using RNaseR digestion. RT‐qPCR was performed to quantify relative hsa_circ_0131235 abundance. RESULTS: Eleven circular RNAs were selected for further investigation. Four candidates produced circular RNA primers with appropriate efficiencies for qPCR. RNaseR treatment and analysis by both basic PCR and qPCR confirmed hsa_circ_0131235 circularity. There was a significant main effect of AD pathology on hsa_circ_0131235 expression. CONCLUSIONS: Elevated hsa_circ_0131235 expression in the MT cortex was significantly associated with AD pathology. John Wiley and Sons Inc. 2021-03-11 /pmc/articles/PMC8035435/ /pubmed/33704916 http://dx.doi.org/10.1002/brb3.2048 Text en © 2021 The Authors. Brain and Behavior published by Wiley Periodicals LLC https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Bigarré, Inès M. Trombetta, Bianca A. Guo, Yan‐jun Arnold, Steven E. Carlyle, Becky C. IGF2R circular RNA hsa_circ_0131235 expression in the middle temporal cortex is associated with AD pathology |
title | IGF2R circular RNA hsa_circ_0131235 expression in the middle temporal cortex is associated with AD pathology |
title_full | IGF2R circular RNA hsa_circ_0131235 expression in the middle temporal cortex is associated with AD pathology |
title_fullStr | IGF2R circular RNA hsa_circ_0131235 expression in the middle temporal cortex is associated with AD pathology |
title_full_unstemmed | IGF2R circular RNA hsa_circ_0131235 expression in the middle temporal cortex is associated with AD pathology |
title_short | IGF2R circular RNA hsa_circ_0131235 expression in the middle temporal cortex is associated with AD pathology |
title_sort | igf2r circular rna hsa_circ_0131235 expression in the middle temporal cortex is associated with ad pathology |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8035435/ https://www.ncbi.nlm.nih.gov/pubmed/33704916 http://dx.doi.org/10.1002/brb3.2048 |
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