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IGF2R circular RNA hsa_circ_0131235 expression in the middle temporal cortex is associated with AD pathology

OBJECTIVE: To identify circular RNAs as candidates for differential expression in the middle temporal (MT) cortex in a well‐characterized cohort with contrasting Alzheimer disease (AD) pathology and cognition. Top screen candidates were assessed for proof of circularity and then quantified by qPCR i...

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Autores principales: Bigarré, Inès M., Trombetta, Bianca A., Guo, Yan‐jun, Arnold, Steven E., Carlyle, Becky C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8035435/
https://www.ncbi.nlm.nih.gov/pubmed/33704916
http://dx.doi.org/10.1002/brb3.2048
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author Bigarré, Inès M.
Trombetta, Bianca A.
Guo, Yan‐jun
Arnold, Steven E.
Carlyle, Becky C.
author_facet Bigarré, Inès M.
Trombetta, Bianca A.
Guo, Yan‐jun
Arnold, Steven E.
Carlyle, Becky C.
author_sort Bigarré, Inès M.
collection PubMed
description OBJECTIVE: To identify circular RNAs as candidates for differential expression in the middle temporal (MT) cortex in a well‐characterized cohort with contrasting Alzheimer disease (AD) pathology and cognition. Top screen candidates were assessed for proof of circularity and then quantified by qPCR in a larger number of samples. METHODS: An initial RNA sequencing screen was performed on n = 20 frozen human tissue samples. Filters were applied to select candidate circular RNAs for further investigation. Frozen human tissue samples were selected for global AD pathology burden and global cognition scores (n = 100). Linear and divergent primers were used to assess circularity using RNaseR digestion. RT‐qPCR was performed to quantify relative hsa_circ_0131235 abundance. RESULTS: Eleven circular RNAs were selected for further investigation. Four candidates produced circular RNA primers with appropriate efficiencies for qPCR. RNaseR treatment and analysis by both basic PCR and qPCR confirmed hsa_circ_0131235 circularity. There was a significant main effect of AD pathology on hsa_circ_0131235 expression. CONCLUSIONS: Elevated hsa_circ_0131235 expression in the MT cortex was significantly associated with AD pathology.
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spelling pubmed-80354352021-04-14 IGF2R circular RNA hsa_circ_0131235 expression in the middle temporal cortex is associated with AD pathology Bigarré, Inès M. Trombetta, Bianca A. Guo, Yan‐jun Arnold, Steven E. Carlyle, Becky C. Brain Behav Original Research OBJECTIVE: To identify circular RNAs as candidates for differential expression in the middle temporal (MT) cortex in a well‐characterized cohort with contrasting Alzheimer disease (AD) pathology and cognition. Top screen candidates were assessed for proof of circularity and then quantified by qPCR in a larger number of samples. METHODS: An initial RNA sequencing screen was performed on n = 20 frozen human tissue samples. Filters were applied to select candidate circular RNAs for further investigation. Frozen human tissue samples were selected for global AD pathology burden and global cognition scores (n = 100). Linear and divergent primers were used to assess circularity using RNaseR digestion. RT‐qPCR was performed to quantify relative hsa_circ_0131235 abundance. RESULTS: Eleven circular RNAs were selected for further investigation. Four candidates produced circular RNA primers with appropriate efficiencies for qPCR. RNaseR treatment and analysis by both basic PCR and qPCR confirmed hsa_circ_0131235 circularity. There was a significant main effect of AD pathology on hsa_circ_0131235 expression. CONCLUSIONS: Elevated hsa_circ_0131235 expression in the MT cortex was significantly associated with AD pathology. John Wiley and Sons Inc. 2021-03-11 /pmc/articles/PMC8035435/ /pubmed/33704916 http://dx.doi.org/10.1002/brb3.2048 Text en © 2021 The Authors. Brain and Behavior published by Wiley Periodicals LLC https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Bigarré, Inès M.
Trombetta, Bianca A.
Guo, Yan‐jun
Arnold, Steven E.
Carlyle, Becky C.
IGF2R circular RNA hsa_circ_0131235 expression in the middle temporal cortex is associated with AD pathology
title IGF2R circular RNA hsa_circ_0131235 expression in the middle temporal cortex is associated with AD pathology
title_full IGF2R circular RNA hsa_circ_0131235 expression in the middle temporal cortex is associated with AD pathology
title_fullStr IGF2R circular RNA hsa_circ_0131235 expression in the middle temporal cortex is associated with AD pathology
title_full_unstemmed IGF2R circular RNA hsa_circ_0131235 expression in the middle temporal cortex is associated with AD pathology
title_short IGF2R circular RNA hsa_circ_0131235 expression in the middle temporal cortex is associated with AD pathology
title_sort igf2r circular rna hsa_circ_0131235 expression in the middle temporal cortex is associated with ad pathology
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8035435/
https://www.ncbi.nlm.nih.gov/pubmed/33704916
http://dx.doi.org/10.1002/brb3.2048
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