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Bayesian Methods for Meta-Analyses of Binary Outcomes: Implementations, Examples, and Impact of Priors

Bayesian methods are an important set of tools for performing meta-analyses. They avoid some potentially unrealistic assumptions that are required by conventional frequentist methods. More importantly, meta-analysts can incorporate prior information from many sources, including experts’ opinions and...

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Autores principales: Al Amer, Fahad M., Thompson, Christopher G., Lin, Lifeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8036799/
https://www.ncbi.nlm.nih.gov/pubmed/33801771
http://dx.doi.org/10.3390/ijerph18073492
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author Al Amer, Fahad M.
Thompson, Christopher G.
Lin, Lifeng
author_facet Al Amer, Fahad M.
Thompson, Christopher G.
Lin, Lifeng
author_sort Al Amer, Fahad M.
collection PubMed
description Bayesian methods are an important set of tools for performing meta-analyses. They avoid some potentially unrealistic assumptions that are required by conventional frequentist methods. More importantly, meta-analysts can incorporate prior information from many sources, including experts’ opinions and prior meta-analyses. Nevertheless, Bayesian methods are used less frequently than conventional frequentist methods, primarily because of the need for nontrivial statistical coding, while frequentist approaches can be implemented via many user-friendly software packages. This article aims at providing a practical review of implementations for Bayesian meta-analyses with various prior distributions. We present Bayesian methods for meta-analyses with the focus on odds ratio for binary outcomes. We summarize various commonly used prior distribution choices for the between-studies heterogeneity variance, a critical parameter in meta-analyses. They include the inverse-gamma, uniform, and half-normal distributions, as well as evidence-based informative log-normal priors. Five real-world examples are presented to illustrate their performance. We provide all of the statistical code for future use by practitioners. Under certain circumstances, Bayesian methods can produce markedly different results from those by frequentist methods, including a change in decision on statistical significance. When data information is limited, the choice of priors may have a large impact on meta-analytic results, in which case sensitivity analyses are recommended. Moreover, the algorithm for implementing Bayesian analyses may not converge for extremely sparse data; caution is needed in interpreting respective results. As such, convergence should be routinely examined. When select statistical assumptions that are made by conventional frequentist methods are violated, Bayesian methods provide a reliable alternative to perform a meta-analysis.
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spelling pubmed-80367992021-04-12 Bayesian Methods for Meta-Analyses of Binary Outcomes: Implementations, Examples, and Impact of Priors Al Amer, Fahad M. Thompson, Christopher G. Lin, Lifeng Int J Environ Res Public Health Article Bayesian methods are an important set of tools for performing meta-analyses. They avoid some potentially unrealistic assumptions that are required by conventional frequentist methods. More importantly, meta-analysts can incorporate prior information from many sources, including experts’ opinions and prior meta-analyses. Nevertheless, Bayesian methods are used less frequently than conventional frequentist methods, primarily because of the need for nontrivial statistical coding, while frequentist approaches can be implemented via many user-friendly software packages. This article aims at providing a practical review of implementations for Bayesian meta-analyses with various prior distributions. We present Bayesian methods for meta-analyses with the focus on odds ratio for binary outcomes. We summarize various commonly used prior distribution choices for the between-studies heterogeneity variance, a critical parameter in meta-analyses. They include the inverse-gamma, uniform, and half-normal distributions, as well as evidence-based informative log-normal priors. Five real-world examples are presented to illustrate their performance. We provide all of the statistical code for future use by practitioners. Under certain circumstances, Bayesian methods can produce markedly different results from those by frequentist methods, including a change in decision on statistical significance. When data information is limited, the choice of priors may have a large impact on meta-analytic results, in which case sensitivity analyses are recommended. Moreover, the algorithm for implementing Bayesian analyses may not converge for extremely sparse data; caution is needed in interpreting respective results. As such, convergence should be routinely examined. When select statistical assumptions that are made by conventional frequentist methods are violated, Bayesian methods provide a reliable alternative to perform a meta-analysis. MDPI 2021-03-27 /pmc/articles/PMC8036799/ /pubmed/33801771 http://dx.doi.org/10.3390/ijerph18073492 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ).
spellingShingle Article
Al Amer, Fahad M.
Thompson, Christopher G.
Lin, Lifeng
Bayesian Methods for Meta-Analyses of Binary Outcomes: Implementations, Examples, and Impact of Priors
title Bayesian Methods for Meta-Analyses of Binary Outcomes: Implementations, Examples, and Impact of Priors
title_full Bayesian Methods for Meta-Analyses of Binary Outcomes: Implementations, Examples, and Impact of Priors
title_fullStr Bayesian Methods for Meta-Analyses of Binary Outcomes: Implementations, Examples, and Impact of Priors
title_full_unstemmed Bayesian Methods for Meta-Analyses of Binary Outcomes: Implementations, Examples, and Impact of Priors
title_short Bayesian Methods for Meta-Analyses of Binary Outcomes: Implementations, Examples, and Impact of Priors
title_sort bayesian methods for meta-analyses of binary outcomes: implementations, examples, and impact of priors
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8036799/
https://www.ncbi.nlm.nih.gov/pubmed/33801771
http://dx.doi.org/10.3390/ijerph18073492
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