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Identification of an immune-related risk signature and nomogram predicting the overall survival in patients with endometrial cancer

OBJECTIVE: Aimed to construct an immune-related risk signature and nomogram predicting endometrial cancer (EC) prognosis. METHODS: An immune-related risk signature in EC was constructed using the least absolute shrinkage and selection operator regression analysis based on The Cancer Genome Atlas (TC...

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Autores principales: Cheng, Yuan, Li, Xingchen, Dai, Yibo, Dong, Yangyang, Yang, Xiao, Wang, Jianliu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Asian Society of Gynecologic Oncology; Korean Society of Gynecologic Oncology; Japan Society of Gynecologic Oncology 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8039179/
https://www.ncbi.nlm.nih.gov/pubmed/33559412
http://dx.doi.org/10.3802/jgo.2021.32.e30
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author Cheng, Yuan
Li, Xingchen
Dai, Yibo
Dong, Yangyang
Yang, Xiao
Wang, Jianliu
author_facet Cheng, Yuan
Li, Xingchen
Dai, Yibo
Dong, Yangyang
Yang, Xiao
Wang, Jianliu
author_sort Cheng, Yuan
collection PubMed
description OBJECTIVE: Aimed to construct an immune-related risk signature and nomogram predicting endometrial cancer (EC) prognosis. METHODS: An immune-related risk signature in EC was constructed using the least absolute shrinkage and selection operator regression analysis based on The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. A nomogram integrating the immune-related genes and the clinicopathological characteristics was established and validated using the Kaplan-Meier survival curve and receiver operating characteristic (ROC) curve to predict the overall survival (OS) of EC patients. The Estimation of STromal and Immune cells in MAlignant Tumor tissues using Expression data (ESTIMATE) R tool was used to explore the immune and stromal scores. RESULTS: CCL17, CTLA4, GPI, HDGF, HFE2, ICOS, IFNG, IL21R, KAL1, NR3C1, S100A2, and S100A9 were used in developing an immune-related risk signature evaluation model. The Kaplan-Meier curve indicated that patients in the low-risk group had better OS (p<0.001). The area under the ROC curve (AUC) values of this model were 0.737, 0.764, and 0.782 for the 3-, 5-, and 7-year OS, respectively. A nomogram integrating the immune-related risk model and clinical features could accurately predict the OS (AUC=0.772, 0.786, and 0.817 at 3-, 5-, and 7-year OS, respectively). The 4 immune cell scores were lower in the high-risk group. Forkhead box P3 (FOXP3) and basic leucine zipper ATF-like transcription factor (BATF) showed a potential significant role in the immune-related risk signature. CONCLUSION: Twelve immune-related genes signature and nomogram for assessing the OS of patients with EC had a good practical value.
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spelling pubmed-80391792021-05-01 Identification of an immune-related risk signature and nomogram predicting the overall survival in patients with endometrial cancer Cheng, Yuan Li, Xingchen Dai, Yibo Dong, Yangyang Yang, Xiao Wang, Jianliu J Gynecol Oncol Original Article OBJECTIVE: Aimed to construct an immune-related risk signature and nomogram predicting endometrial cancer (EC) prognosis. METHODS: An immune-related risk signature in EC was constructed using the least absolute shrinkage and selection operator regression analysis based on The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. A nomogram integrating the immune-related genes and the clinicopathological characteristics was established and validated using the Kaplan-Meier survival curve and receiver operating characteristic (ROC) curve to predict the overall survival (OS) of EC patients. The Estimation of STromal and Immune cells in MAlignant Tumor tissues using Expression data (ESTIMATE) R tool was used to explore the immune and stromal scores. RESULTS: CCL17, CTLA4, GPI, HDGF, HFE2, ICOS, IFNG, IL21R, KAL1, NR3C1, S100A2, and S100A9 were used in developing an immune-related risk signature evaluation model. The Kaplan-Meier curve indicated that patients in the low-risk group had better OS (p<0.001). The area under the ROC curve (AUC) values of this model were 0.737, 0.764, and 0.782 for the 3-, 5-, and 7-year OS, respectively. A nomogram integrating the immune-related risk model and clinical features could accurately predict the OS (AUC=0.772, 0.786, and 0.817 at 3-, 5-, and 7-year OS, respectively). The 4 immune cell scores were lower in the high-risk group. Forkhead box P3 (FOXP3) and basic leucine zipper ATF-like transcription factor (BATF) showed a potential significant role in the immune-related risk signature. CONCLUSION: Twelve immune-related genes signature and nomogram for assessing the OS of patients with EC had a good practical value. Asian Society of Gynecologic Oncology; Korean Society of Gynecologic Oncology; Japan Society of Gynecologic Oncology 2021-01-25 /pmc/articles/PMC8039179/ /pubmed/33559412 http://dx.doi.org/10.3802/jgo.2021.32.e30 Text en Copyright © 2021. Asian Society of Gynecologic Oncology, Korean Society of Gynecologic Oncology, and Japan Society of Gynecologic Oncology https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (https://creativecommons.org/licenses/by-nc/4.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Cheng, Yuan
Li, Xingchen
Dai, Yibo
Dong, Yangyang
Yang, Xiao
Wang, Jianliu
Identification of an immune-related risk signature and nomogram predicting the overall survival in patients with endometrial cancer
title Identification of an immune-related risk signature and nomogram predicting the overall survival in patients with endometrial cancer
title_full Identification of an immune-related risk signature and nomogram predicting the overall survival in patients with endometrial cancer
title_fullStr Identification of an immune-related risk signature and nomogram predicting the overall survival in patients with endometrial cancer
title_full_unstemmed Identification of an immune-related risk signature and nomogram predicting the overall survival in patients with endometrial cancer
title_short Identification of an immune-related risk signature and nomogram predicting the overall survival in patients with endometrial cancer
title_sort identification of an immune-related risk signature and nomogram predicting the overall survival in patients with endometrial cancer
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8039179/
https://www.ncbi.nlm.nih.gov/pubmed/33559412
http://dx.doi.org/10.3802/jgo.2021.32.e30
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