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Optimized imaging methods for species-level identification of food-contaminating beetles
Identifying the exact species of pantry beetle responsible for food contamination, is imperative in assessing the risks associated with contamination scenarios. Each beetle species is known to have unique patterns on their hardened forewings (known as elytra) through which they can be identified. Cu...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8041796/ https://www.ncbi.nlm.nih.gov/pubmed/33846381 http://dx.doi.org/10.1038/s41598-021-86643-y |
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author | Bera, Tanmay Wu, Leihong Ding, Hongjian Semey, Howard Barnes, Amy Liu, Zhichao Vyas, Himansu Tong, Weida Xu, Joshua |
author_facet | Bera, Tanmay Wu, Leihong Ding, Hongjian Semey, Howard Barnes, Amy Liu, Zhichao Vyas, Himansu Tong, Weida Xu, Joshua |
author_sort | Bera, Tanmay |
collection | PubMed |
description | Identifying the exact species of pantry beetle responsible for food contamination, is imperative in assessing the risks associated with contamination scenarios. Each beetle species is known to have unique patterns on their hardened forewings (known as elytra) through which they can be identified. Currently, this is done through manual microanalysis of the insect or their fragments in contaminated food samples. We envision that the use of automated pattern analysis would expedite and scale up the identification process. However, such automation would require images to be captured in a consistent manner, thereby enabling the creation of large repositories of high-quality images. Presently, there is no standard imaging technique for capturing images of beetle elytra, which consequently means, there is no standard method of beetle species identification through elytral pattern analysis. This deficiency inspired us to optimize and standardize imaging methods, especially for food-contaminating beetles. For this endeavor, we chose multiple species of beetles belonging to different families or genera that have near-identical elytral patterns, and thus are difficult to identify correctly at the species level. Our optimized imaging method provides enhanced images such that the elytral patterns between individual species could easily be distinguished from each other, through visual observation. We believe such standardization is critical in developing automated species identification of pantry beetles and/or other insects. This eventually may lead to improved taxonomical classification, allowing for better management of food contamination and ecological conservation. |
format | Online Article Text |
id | pubmed-8041796 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-80417962021-04-13 Optimized imaging methods for species-level identification of food-contaminating beetles Bera, Tanmay Wu, Leihong Ding, Hongjian Semey, Howard Barnes, Amy Liu, Zhichao Vyas, Himansu Tong, Weida Xu, Joshua Sci Rep Article Identifying the exact species of pantry beetle responsible for food contamination, is imperative in assessing the risks associated with contamination scenarios. Each beetle species is known to have unique patterns on their hardened forewings (known as elytra) through which they can be identified. Currently, this is done through manual microanalysis of the insect or their fragments in contaminated food samples. We envision that the use of automated pattern analysis would expedite and scale up the identification process. However, such automation would require images to be captured in a consistent manner, thereby enabling the creation of large repositories of high-quality images. Presently, there is no standard imaging technique for capturing images of beetle elytra, which consequently means, there is no standard method of beetle species identification through elytral pattern analysis. This deficiency inspired us to optimize and standardize imaging methods, especially for food-contaminating beetles. For this endeavor, we chose multiple species of beetles belonging to different families or genera that have near-identical elytral patterns, and thus are difficult to identify correctly at the species level. Our optimized imaging method provides enhanced images such that the elytral patterns between individual species could easily be distinguished from each other, through visual observation. We believe such standardization is critical in developing automated species identification of pantry beetles and/or other insects. This eventually may lead to improved taxonomical classification, allowing for better management of food contamination and ecological conservation. Nature Publishing Group UK 2021-04-12 /pmc/articles/PMC8041796/ /pubmed/33846381 http://dx.doi.org/10.1038/s41598-021-86643-y Text en © This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Bera, Tanmay Wu, Leihong Ding, Hongjian Semey, Howard Barnes, Amy Liu, Zhichao Vyas, Himansu Tong, Weida Xu, Joshua Optimized imaging methods for species-level identification of food-contaminating beetles |
title | Optimized imaging methods for species-level identification of food-contaminating beetles |
title_full | Optimized imaging methods for species-level identification of food-contaminating beetles |
title_fullStr | Optimized imaging methods for species-level identification of food-contaminating beetles |
title_full_unstemmed | Optimized imaging methods for species-level identification of food-contaminating beetles |
title_short | Optimized imaging methods for species-level identification of food-contaminating beetles |
title_sort | optimized imaging methods for species-level identification of food-contaminating beetles |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8041796/ https://www.ncbi.nlm.nih.gov/pubmed/33846381 http://dx.doi.org/10.1038/s41598-021-86643-y |
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