Cargando…
Computing inelastic neutron scattering spectra from molecular dynamics trajectories
Inelastic neutron scattering (INS) provides a weighted density of phonon modes. Currently, INS spectra can only be interpreted for perfectly crystalline materials because of high computational cost for electronic simulations. INS has the potential to provide detailed morphological information if suf...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8041884/ https://www.ncbi.nlm.nih.gov/pubmed/33846390 http://dx.doi.org/10.1038/s41598-021-86771-5 |
_version_ | 1783678030872313856 |
---|---|
author | Harrelson, Thomas F. Dettmann, Makena Scherer, Christoph Andrienko, Denis Moulé, Adam J. Faller, Roland |
author_facet | Harrelson, Thomas F. Dettmann, Makena Scherer, Christoph Andrienko, Denis Moulé, Adam J. Faller, Roland |
author_sort | Harrelson, Thomas F. |
collection | PubMed |
description | Inelastic neutron scattering (INS) provides a weighted density of phonon modes. Currently, INS spectra can only be interpreted for perfectly crystalline materials because of high computational cost for electronic simulations. INS has the potential to provide detailed morphological information if sufficiently large volumes and appropriate structural variety are simulated. Here, we propose a method that allows direct comparison between INS data with molecular dynamics simulations, a simulation method that is frequently used to simulate semicrystalline/amorphous materials. We illustrate the technique by analyzing spectra of a well-studied conjugated polymer, poly(3-hexylthiophene-2,5-diyl) (P3HT) and conclude that our technique provides improved volume and structural variety, but that the classical force field requires improvement before the morphology can be accurately interpreted. |
format | Online Article Text |
id | pubmed-8041884 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-80418842021-04-13 Computing inelastic neutron scattering spectra from molecular dynamics trajectories Harrelson, Thomas F. Dettmann, Makena Scherer, Christoph Andrienko, Denis Moulé, Adam J. Faller, Roland Sci Rep Article Inelastic neutron scattering (INS) provides a weighted density of phonon modes. Currently, INS spectra can only be interpreted for perfectly crystalline materials because of high computational cost for electronic simulations. INS has the potential to provide detailed morphological information if sufficiently large volumes and appropriate structural variety are simulated. Here, we propose a method that allows direct comparison between INS data with molecular dynamics simulations, a simulation method that is frequently used to simulate semicrystalline/amorphous materials. We illustrate the technique by analyzing spectra of a well-studied conjugated polymer, poly(3-hexylthiophene-2,5-diyl) (P3HT) and conclude that our technique provides improved volume and structural variety, but that the classical force field requires improvement before the morphology can be accurately interpreted. Nature Publishing Group UK 2021-04-12 /pmc/articles/PMC8041884/ /pubmed/33846390 http://dx.doi.org/10.1038/s41598-021-86771-5 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Harrelson, Thomas F. Dettmann, Makena Scherer, Christoph Andrienko, Denis Moulé, Adam J. Faller, Roland Computing inelastic neutron scattering spectra from molecular dynamics trajectories |
title | Computing inelastic neutron scattering spectra from molecular dynamics trajectories |
title_full | Computing inelastic neutron scattering spectra from molecular dynamics trajectories |
title_fullStr | Computing inelastic neutron scattering spectra from molecular dynamics trajectories |
title_full_unstemmed | Computing inelastic neutron scattering spectra from molecular dynamics trajectories |
title_short | Computing inelastic neutron scattering spectra from molecular dynamics trajectories |
title_sort | computing inelastic neutron scattering spectra from molecular dynamics trajectories |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8041884/ https://www.ncbi.nlm.nih.gov/pubmed/33846390 http://dx.doi.org/10.1038/s41598-021-86771-5 |
work_keys_str_mv | AT harrelsonthomasf computinginelasticneutronscatteringspectrafrommoleculardynamicstrajectories AT dettmannmakena computinginelasticneutronscatteringspectrafrommoleculardynamicstrajectories AT schererchristoph computinginelasticneutronscatteringspectrafrommoleculardynamicstrajectories AT andrienkodenis computinginelasticneutronscatteringspectrafrommoleculardynamicstrajectories AT mouleadamj computinginelasticneutronscatteringspectrafrommoleculardynamicstrajectories AT fallerroland computinginelasticneutronscatteringspectrafrommoleculardynamicstrajectories |