Cargando…

Impact of image compression on deep learning-based mammogram classification

Image compression is used in several clinical organizations to help address the overhead associated with medical imaging. These methods reduce file size by using a compact representation of the original image. This study aimed to analyze the impact of image compression on the performance of deep lea...

Descripción completa

Detalles Bibliográficos
Autores principales: Jo, Yong-Yeon, Choi, Young Sang, Park, Hyun Woo, Lee, Jae Hyeok, Jung, Hyojung, Kim, Hyo-Eun, Ko, Kyounglan, Lee, Chan Wha, Cha, Hyo Soung, Hwangbo, Yul
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8042042/
https://www.ncbi.nlm.nih.gov/pubmed/33846388
http://dx.doi.org/10.1038/s41598-021-86726-w
_version_ 1783678050518433792
author Jo, Yong-Yeon
Choi, Young Sang
Park, Hyun Woo
Lee, Jae Hyeok
Jung, Hyojung
Kim, Hyo-Eun
Ko, Kyounglan
Lee, Chan Wha
Cha, Hyo Soung
Hwangbo, Yul
author_facet Jo, Yong-Yeon
Choi, Young Sang
Park, Hyun Woo
Lee, Jae Hyeok
Jung, Hyojung
Kim, Hyo-Eun
Ko, Kyounglan
Lee, Chan Wha
Cha, Hyo Soung
Hwangbo, Yul
author_sort Jo, Yong-Yeon
collection PubMed
description Image compression is used in several clinical organizations to help address the overhead associated with medical imaging. These methods reduce file size by using a compact representation of the original image. This study aimed to analyze the impact of image compression on the performance of deep learning-based models in classifying mammograms as “malignant”—cases that lead to a cancer diagnosis and treatment—or “normal” and “benign,” non-malignant cases that do not require immediate medical intervention. In this retrospective study, 9111 unique mammograms–5672 normal, 1686 benign, and 1754 malignant cases were collected from the National Cancer Center in the Republic of Korea. Image compression was applied to mammograms with compression ratios (CRs) ranging from 15 to 11 K. Convolutional neural networks (CNNs) with three convolutional layers and three fully-connected layers were trained using these images to classify a mammogram as malignant or not malignant across a range of CRs using five-fold cross-validation. Models trained on images with maximum CRs of 5 K had an average area under the receiver operating characteristic curve (AUROC) of 0.87 and area under the precision-recall curve (AUPRC) of 0.75 across the five folds and compression ratios. For images compressed with CRs of 10 K and 11 K, model performance decreased (average 0.79 in AUROC and 0.49 in AUPRC). Upon generating saliency maps that visualize the areas each model views as significant for prediction, models trained on less compressed (CR <  = 5 K) images had maps encapsulating a radiologist’s label, while models trained on images with higher amounts of compression had maps that missed the ground truth completely. In addition, base ResNet18 models pre-trained on ImageNet and trained using compressed mammograms did not show performance improvements over our CNN model, with AUROC and AUPRC values ranging from 0.77 to 0.87 and 0.52 to 0.71 respectively when trained and tested on images with maximum CRs of 5 K. This paper finds that while training models on images with increased the robustness of the models when tested on compressed data, moderate image compression did not substantially impact the classification performance of DL-based models.
format Online
Article
Text
id pubmed-8042042
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-80420422021-04-14 Impact of image compression on deep learning-based mammogram classification Jo, Yong-Yeon Choi, Young Sang Park, Hyun Woo Lee, Jae Hyeok Jung, Hyojung Kim, Hyo-Eun Ko, Kyounglan Lee, Chan Wha Cha, Hyo Soung Hwangbo, Yul Sci Rep Article Image compression is used in several clinical organizations to help address the overhead associated with medical imaging. These methods reduce file size by using a compact representation of the original image. This study aimed to analyze the impact of image compression on the performance of deep learning-based models in classifying mammograms as “malignant”—cases that lead to a cancer diagnosis and treatment—or “normal” and “benign,” non-malignant cases that do not require immediate medical intervention. In this retrospective study, 9111 unique mammograms–5672 normal, 1686 benign, and 1754 malignant cases were collected from the National Cancer Center in the Republic of Korea. Image compression was applied to mammograms with compression ratios (CRs) ranging from 15 to 11 K. Convolutional neural networks (CNNs) with three convolutional layers and three fully-connected layers were trained using these images to classify a mammogram as malignant or not malignant across a range of CRs using five-fold cross-validation. Models trained on images with maximum CRs of 5 K had an average area under the receiver operating characteristic curve (AUROC) of 0.87 and area under the precision-recall curve (AUPRC) of 0.75 across the five folds and compression ratios. For images compressed with CRs of 10 K and 11 K, model performance decreased (average 0.79 in AUROC and 0.49 in AUPRC). Upon generating saliency maps that visualize the areas each model views as significant for prediction, models trained on less compressed (CR <  = 5 K) images had maps encapsulating a radiologist’s label, while models trained on images with higher amounts of compression had maps that missed the ground truth completely. In addition, base ResNet18 models pre-trained on ImageNet and trained using compressed mammograms did not show performance improvements over our CNN model, with AUROC and AUPRC values ranging from 0.77 to 0.87 and 0.52 to 0.71 respectively when trained and tested on images with maximum CRs of 5 K. This paper finds that while training models on images with increased the robustness of the models when tested on compressed data, moderate image compression did not substantially impact the classification performance of DL-based models. Nature Publishing Group UK 2021-04-12 /pmc/articles/PMC8042042/ /pubmed/33846388 http://dx.doi.org/10.1038/s41598-021-86726-w Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Jo, Yong-Yeon
Choi, Young Sang
Park, Hyun Woo
Lee, Jae Hyeok
Jung, Hyojung
Kim, Hyo-Eun
Ko, Kyounglan
Lee, Chan Wha
Cha, Hyo Soung
Hwangbo, Yul
Impact of image compression on deep learning-based mammogram classification
title Impact of image compression on deep learning-based mammogram classification
title_full Impact of image compression on deep learning-based mammogram classification
title_fullStr Impact of image compression on deep learning-based mammogram classification
title_full_unstemmed Impact of image compression on deep learning-based mammogram classification
title_short Impact of image compression on deep learning-based mammogram classification
title_sort impact of image compression on deep learning-based mammogram classification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8042042/
https://www.ncbi.nlm.nih.gov/pubmed/33846388
http://dx.doi.org/10.1038/s41598-021-86726-w
work_keys_str_mv AT joyongyeon impactofimagecompressionondeeplearningbasedmammogramclassification
AT choiyoungsang impactofimagecompressionondeeplearningbasedmammogramclassification
AT parkhyunwoo impactofimagecompressionondeeplearningbasedmammogramclassification
AT leejaehyeok impactofimagecompressionondeeplearningbasedmammogramclassification
AT junghyojung impactofimagecompressionondeeplearningbasedmammogramclassification
AT kimhyoeun impactofimagecompressionondeeplearningbasedmammogramclassification
AT kokyounglan impactofimagecompressionondeeplearningbasedmammogramclassification
AT leechanwha impactofimagecompressionondeeplearningbasedmammogramclassification
AT chahyosoung impactofimagecompressionondeeplearningbasedmammogramclassification
AT hwangboyul impactofimagecompressionondeeplearningbasedmammogramclassification