Cargando…

An Immune-Related Gene Pairs Signature for Predicting Survival in Glioblastoma

Background: Glioblastoma (GBM) is the frequently occurring and most aggressive form of brain tumors. In the study, we constructed an immune-related gene pairs (IRGPs) signature to predict overall survival (OS) in patients with GBM. Methods: We established IRGPs with immune-related gene (IRG) matrix...

Descripción completa

Detalles Bibliográficos
Autores principales: Wang, Sheng, Xu, Xia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8042321/
https://www.ncbi.nlm.nih.gov/pubmed/33859933
http://dx.doi.org/10.3389/fonc.2021.564960
_version_ 1783678102414557184
author Wang, Sheng
Xu, Xia
author_facet Wang, Sheng
Xu, Xia
author_sort Wang, Sheng
collection PubMed
description Background: Glioblastoma (GBM) is the frequently occurring and most aggressive form of brain tumors. In the study, we constructed an immune-related gene pairs (IRGPs) signature to predict overall survival (OS) in patients with GBM. Methods: We established IRGPs with immune-related gene (IRG) matrix from The Cancer Genome Atlas (TCGA) database (Training cohort). After screened by the univariate regression analysis and least absolute shrinkage and selection operator (LASSO) regression analysis, IRGPs were subjected to the multivariable Cox regression to develop an IRGP signature. Then, the predicting accuracy of the signature was assessed with the area under the receiver operating characteristic curve (AUC) and validated the result using the Chinese Glioma Genome Atlas (CGGA) database (Validation cohorts 1 and 2). Results: A 10-IRGP signature was established for predicting the OS of patients with GBM. The AUC for predicting 1-, 3-, and 5-year OS in Training cohort was 0.801, 0.901, and 0.964, respectively, in line with the AUC of Validation cohorts 1 and 2 [Validation cohort 1 (1 year: 0.763; 3 years: 0.786; and 5 years: 0.884); Validation cohort 2 (1 year: 0.745; 3 years: 0.989; and 5 years: 0.987)]. Moreover, survival analysis in three cohorts suggested that patients with low-risk GBM had better clinical outcomes than patients with high-risk GBM. The univariate and multivariable Cox regression demonstrated that the IRGPs signature was an independent prognostic factor. Conclusions: We developed a novel IRGPs signature for predicting OS in patients with GBM.
format Online
Article
Text
id pubmed-8042321
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-80423212021-04-14 An Immune-Related Gene Pairs Signature for Predicting Survival in Glioblastoma Wang, Sheng Xu, Xia Front Oncol Oncology Background: Glioblastoma (GBM) is the frequently occurring and most aggressive form of brain tumors. In the study, we constructed an immune-related gene pairs (IRGPs) signature to predict overall survival (OS) in patients with GBM. Methods: We established IRGPs with immune-related gene (IRG) matrix from The Cancer Genome Atlas (TCGA) database (Training cohort). After screened by the univariate regression analysis and least absolute shrinkage and selection operator (LASSO) regression analysis, IRGPs were subjected to the multivariable Cox regression to develop an IRGP signature. Then, the predicting accuracy of the signature was assessed with the area under the receiver operating characteristic curve (AUC) and validated the result using the Chinese Glioma Genome Atlas (CGGA) database (Validation cohorts 1 and 2). Results: A 10-IRGP signature was established for predicting the OS of patients with GBM. The AUC for predicting 1-, 3-, and 5-year OS in Training cohort was 0.801, 0.901, and 0.964, respectively, in line with the AUC of Validation cohorts 1 and 2 [Validation cohort 1 (1 year: 0.763; 3 years: 0.786; and 5 years: 0.884); Validation cohort 2 (1 year: 0.745; 3 years: 0.989; and 5 years: 0.987)]. Moreover, survival analysis in three cohorts suggested that patients with low-risk GBM had better clinical outcomes than patients with high-risk GBM. The univariate and multivariable Cox regression demonstrated that the IRGPs signature was an independent prognostic factor. Conclusions: We developed a novel IRGPs signature for predicting OS in patients with GBM. Frontiers Media S.A. 2021-03-30 /pmc/articles/PMC8042321/ /pubmed/33859933 http://dx.doi.org/10.3389/fonc.2021.564960 Text en Copyright © 2021 Wang and Xu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Wang, Sheng
Xu, Xia
An Immune-Related Gene Pairs Signature for Predicting Survival in Glioblastoma
title An Immune-Related Gene Pairs Signature for Predicting Survival in Glioblastoma
title_full An Immune-Related Gene Pairs Signature for Predicting Survival in Glioblastoma
title_fullStr An Immune-Related Gene Pairs Signature for Predicting Survival in Glioblastoma
title_full_unstemmed An Immune-Related Gene Pairs Signature for Predicting Survival in Glioblastoma
title_short An Immune-Related Gene Pairs Signature for Predicting Survival in Glioblastoma
title_sort immune-related gene pairs signature for predicting survival in glioblastoma
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8042321/
https://www.ncbi.nlm.nih.gov/pubmed/33859933
http://dx.doi.org/10.3389/fonc.2021.564960
work_keys_str_mv AT wangsheng animmunerelatedgenepairssignatureforpredictingsurvivalinglioblastoma
AT xuxia animmunerelatedgenepairssignatureforpredictingsurvivalinglioblastoma
AT wangsheng immunerelatedgenepairssignatureforpredictingsurvivalinglioblastoma
AT xuxia immunerelatedgenepairssignatureforpredictingsurvivalinglioblastoma