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Antibodies to the SARS-CoV-2 receptor-binding domain that maximize breadth and resistance to viral escape

An ideal anti-SARS-CoV-2 antibody would resist viral escape(1–3), have activity against diverse SARS-related coronaviruses(4–7), and be highly protective through viral neutralization(8–11) and effector functions(12,13). Understanding how these properties relate to each other and vary across epitopes...

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Autores principales: Starr, Tyler N., Czudnochowski, Nadine, Zatta, Fabrizia, Park, Young-Jun, Liu, Zhuoming, Addetia, Amin, Pinto, Dora, Beltramello, Martina, Hernandez, Patrick, Greaney, Allison J., Marzi, Roberta, Glass, William G., Zhang, Ivy, Dingens, Adam S., Bowen, John E., Wojcechowskyj, Jason A., De Marco, Anna, Rosen, Laura E., Zhou, Jiayi, Montiel-Ruiz, Martin, Kaiser, Hannah, Tucker, Heather, Housley, Michael P., di Iulio, Julia, Lombardo, Gloria, Agostini, Maria, Sprugasci, Nicole, Culap, Katja, Jaconi, Stefano, Meury, Marcel, Dellota, Exequiel, Cameroni, Elisabetta, Croll, Tristan I., Nix, Jay C., Havenar-Daughton, Colin, Telenti, Amalio, Lempp, Florian A., Pizzuto, Matteo S., Chodera, John D., Hebner, Christy M., Whelan, Sean P.J., Virgin, Herbert W., Veesler, David, Corti, Davide, Bloom, Jesse D., Snell, Gyorgy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8043444/
https://www.ncbi.nlm.nih.gov/pubmed/33851154
http://dx.doi.org/10.1101/2021.04.06.438709
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author Starr, Tyler N.
Czudnochowski, Nadine
Zatta, Fabrizia
Park, Young-Jun
Liu, Zhuoming
Addetia, Amin
Pinto, Dora
Beltramello, Martina
Hernandez, Patrick
Greaney, Allison J.
Marzi, Roberta
Glass, William G.
Zhang, Ivy
Dingens, Adam S.
Bowen, John E.
Wojcechowskyj, Jason A.
De Marco, Anna
Rosen, Laura E.
Zhou, Jiayi
Montiel-Ruiz, Martin
Kaiser, Hannah
Tucker, Heather
Housley, Michael P.
di Iulio, Julia
Lombardo, Gloria
Agostini, Maria
Sprugasci, Nicole
Culap, Katja
Jaconi, Stefano
Meury, Marcel
Dellota, Exequiel
Cameroni, Elisabetta
Croll, Tristan I.
Nix, Jay C.
Havenar-Daughton, Colin
Telenti, Amalio
Lempp, Florian A.
Pizzuto, Matteo S.
Chodera, John D.
Hebner, Christy M.
Whelan, Sean P.J.
Virgin, Herbert W.
Veesler, David
Corti, Davide
Bloom, Jesse D.
Snell, Gyorgy
author_facet Starr, Tyler N.
Czudnochowski, Nadine
Zatta, Fabrizia
Park, Young-Jun
Liu, Zhuoming
Addetia, Amin
Pinto, Dora
Beltramello, Martina
Hernandez, Patrick
Greaney, Allison J.
Marzi, Roberta
Glass, William G.
Zhang, Ivy
Dingens, Adam S.
Bowen, John E.
Wojcechowskyj, Jason A.
De Marco, Anna
Rosen, Laura E.
Zhou, Jiayi
Montiel-Ruiz, Martin
Kaiser, Hannah
Tucker, Heather
Housley, Michael P.
di Iulio, Julia
Lombardo, Gloria
Agostini, Maria
Sprugasci, Nicole
Culap, Katja
Jaconi, Stefano
Meury, Marcel
Dellota, Exequiel
Cameroni, Elisabetta
Croll, Tristan I.
Nix, Jay C.
Havenar-Daughton, Colin
Telenti, Amalio
Lempp, Florian A.
Pizzuto, Matteo S.
Chodera, John D.
Hebner, Christy M.
Whelan, Sean P.J.
Virgin, Herbert W.
Veesler, David
Corti, Davide
Bloom, Jesse D.
Snell, Gyorgy
author_sort Starr, Tyler N.
collection PubMed
description An ideal anti-SARS-CoV-2 antibody would resist viral escape(1–3), have activity against diverse SARS-related coronaviruses(4–7), and be highly protective through viral neutralization(8–11) and effector functions(12,13). Understanding how these properties relate to each other and vary across epitopes would aid development of antibody therapeutics and guide vaccine design. Here, we comprehensively characterize escape, breadth, and potency across a panel of SARS-CoV-2 antibodies targeting the receptor-binding domain (RBD), including S309(4), the parental antibody of the late-stage clinical antibody VIR-7831. We observe a tradeoff between SARS-CoV-2 in vitro neutralization potency and breadth of binding across SARS-related coronaviruses. Nevertheless, we identify several neutralizing antibodies with exceptional breadth and resistance to escape, including a new antibody (S2H97) that binds with high affinity to all SARS-related coronavirus clades via a unique RBD epitope centered on residue E516. S2H97 and other escape-resistant antibodies have high binding affinity and target functionally constrained RBD residues. We find that antibodies targeting the ACE2 receptor binding motif (RBM) typically have poor breadth and are readily escaped by mutations despite high neutralization potency, but we identify one potent RBM antibody (S2E12) with breadth across sarbecoviruses closely related to SARS-CoV-2 and with a high barrier to viral escape. These data highlight functional diversity among antibodies targeting the RBD and identify epitopes and features to prioritize for antibody and vaccine development against the current and potential future pandemics.
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spelling pubmed-80434442021-04-14 Antibodies to the SARS-CoV-2 receptor-binding domain that maximize breadth and resistance to viral escape Starr, Tyler N. Czudnochowski, Nadine Zatta, Fabrizia Park, Young-Jun Liu, Zhuoming Addetia, Amin Pinto, Dora Beltramello, Martina Hernandez, Patrick Greaney, Allison J. Marzi, Roberta Glass, William G. Zhang, Ivy Dingens, Adam S. Bowen, John E. Wojcechowskyj, Jason A. De Marco, Anna Rosen, Laura E. Zhou, Jiayi Montiel-Ruiz, Martin Kaiser, Hannah Tucker, Heather Housley, Michael P. di Iulio, Julia Lombardo, Gloria Agostini, Maria Sprugasci, Nicole Culap, Katja Jaconi, Stefano Meury, Marcel Dellota, Exequiel Cameroni, Elisabetta Croll, Tristan I. Nix, Jay C. Havenar-Daughton, Colin Telenti, Amalio Lempp, Florian A. Pizzuto, Matteo S. Chodera, John D. Hebner, Christy M. Whelan, Sean P.J. Virgin, Herbert W. Veesler, David Corti, Davide Bloom, Jesse D. Snell, Gyorgy bioRxiv Article An ideal anti-SARS-CoV-2 antibody would resist viral escape(1–3), have activity against diverse SARS-related coronaviruses(4–7), and be highly protective through viral neutralization(8–11) and effector functions(12,13). Understanding how these properties relate to each other and vary across epitopes would aid development of antibody therapeutics and guide vaccine design. Here, we comprehensively characterize escape, breadth, and potency across a panel of SARS-CoV-2 antibodies targeting the receptor-binding domain (RBD), including S309(4), the parental antibody of the late-stage clinical antibody VIR-7831. We observe a tradeoff between SARS-CoV-2 in vitro neutralization potency and breadth of binding across SARS-related coronaviruses. Nevertheless, we identify several neutralizing antibodies with exceptional breadth and resistance to escape, including a new antibody (S2H97) that binds with high affinity to all SARS-related coronavirus clades via a unique RBD epitope centered on residue E516. S2H97 and other escape-resistant antibodies have high binding affinity and target functionally constrained RBD residues. We find that antibodies targeting the ACE2 receptor binding motif (RBM) typically have poor breadth and are readily escaped by mutations despite high neutralization potency, but we identify one potent RBM antibody (S2E12) with breadth across sarbecoviruses closely related to SARS-CoV-2 and with a high barrier to viral escape. These data highlight functional diversity among antibodies targeting the RBD and identify epitopes and features to prioritize for antibody and vaccine development against the current and potential future pandemics. Cold Spring Harbor Laboratory 2021-04-08 /pmc/articles/PMC8043444/ /pubmed/33851154 http://dx.doi.org/10.1101/2021.04.06.438709 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Starr, Tyler N.
Czudnochowski, Nadine
Zatta, Fabrizia
Park, Young-Jun
Liu, Zhuoming
Addetia, Amin
Pinto, Dora
Beltramello, Martina
Hernandez, Patrick
Greaney, Allison J.
Marzi, Roberta
Glass, William G.
Zhang, Ivy
Dingens, Adam S.
Bowen, John E.
Wojcechowskyj, Jason A.
De Marco, Anna
Rosen, Laura E.
Zhou, Jiayi
Montiel-Ruiz, Martin
Kaiser, Hannah
Tucker, Heather
Housley, Michael P.
di Iulio, Julia
Lombardo, Gloria
Agostini, Maria
Sprugasci, Nicole
Culap, Katja
Jaconi, Stefano
Meury, Marcel
Dellota, Exequiel
Cameroni, Elisabetta
Croll, Tristan I.
Nix, Jay C.
Havenar-Daughton, Colin
Telenti, Amalio
Lempp, Florian A.
Pizzuto, Matteo S.
Chodera, John D.
Hebner, Christy M.
Whelan, Sean P.J.
Virgin, Herbert W.
Veesler, David
Corti, Davide
Bloom, Jesse D.
Snell, Gyorgy
Antibodies to the SARS-CoV-2 receptor-binding domain that maximize breadth and resistance to viral escape
title Antibodies to the SARS-CoV-2 receptor-binding domain that maximize breadth and resistance to viral escape
title_full Antibodies to the SARS-CoV-2 receptor-binding domain that maximize breadth and resistance to viral escape
title_fullStr Antibodies to the SARS-CoV-2 receptor-binding domain that maximize breadth and resistance to viral escape
title_full_unstemmed Antibodies to the SARS-CoV-2 receptor-binding domain that maximize breadth and resistance to viral escape
title_short Antibodies to the SARS-CoV-2 receptor-binding domain that maximize breadth and resistance to viral escape
title_sort antibodies to the sars-cov-2 receptor-binding domain that maximize breadth and resistance to viral escape
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8043444/
https://www.ncbi.nlm.nih.gov/pubmed/33851154
http://dx.doi.org/10.1101/2021.04.06.438709
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