Cargando…

The complete mitochondrial genome of Palomena viridissima (Hemiptera: Pentatomidae) and phylogenetic analysis

Here, we sequenced and annotated the complete mitochondrial genome (mitogenome) of Palomena viridissima (Hemiptera: Pentatomidae). This mitogenome was 15,118 bp long, comprising of 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), 2 ribosomal RNA genes (rrnL and rrnS) and a large non-co...

Descripción completa

Detalles Bibliográficos
Autores principales: Chen, Wen-Ting, Zhang, Li-Jun, Cao, Ya, Yuan, Ming-Long
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8043517/
https://www.ncbi.nlm.nih.gov/pubmed/33889740
http://dx.doi.org/10.1080/23802359.2021.1909442
_version_ 1783678320945135616
author Chen, Wen-Ting
Zhang, Li-Jun
Cao, Ya
Yuan, Ming-Long
author_facet Chen, Wen-Ting
Zhang, Li-Jun
Cao, Ya
Yuan, Ming-Long
author_sort Chen, Wen-Ting
collection PubMed
description Here, we sequenced and annotated the complete mitochondrial genome (mitogenome) of Palomena viridissima (Hemiptera: Pentatomidae). This mitogenome was 15,118 bp long, comprising of 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), 2 ribosomal RNA genes (rrnL and rrnS) and a large non-coding control region. The P. viridissima mitogenome with an A + T content of 76.0%, presented a positive AT-skew (0.11) and a negative GC-skew (-0.13). Ten PCGs started with a typical ATN codon, two PCGs started with TTG (atp8, nad1), whereas the remaining one used AAC (cox1). All tRNAs had a typical secondary cloverleaf structure, except for trnS1 which lacked the dihydrouridine arm. The Bayesian phylogenetic analysis based on mitogenomic data supported a sister relationship of P. viridissima and Nezara viridula from the same tribe Nezarini and recovered a phylogeny of Pentatominae: (Menidini + (Strachiini + (Pentatomini + ((Cappaeini + Halyini) + (Eysarcorini + (Nezarini + Carpocori)))))).
format Online
Article
Text
id pubmed-8043517
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-80435172021-04-21 The complete mitochondrial genome of Palomena viridissima (Hemiptera: Pentatomidae) and phylogenetic analysis Chen, Wen-Ting Zhang, Li-Jun Cao, Ya Yuan, Ming-Long Mitochondrial DNA B Resour Mitogenome Announcement Here, we sequenced and annotated the complete mitochondrial genome (mitogenome) of Palomena viridissima (Hemiptera: Pentatomidae). This mitogenome was 15,118 bp long, comprising of 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), 2 ribosomal RNA genes (rrnL and rrnS) and a large non-coding control region. The P. viridissima mitogenome with an A + T content of 76.0%, presented a positive AT-skew (0.11) and a negative GC-skew (-0.13). Ten PCGs started with a typical ATN codon, two PCGs started with TTG (atp8, nad1), whereas the remaining one used AAC (cox1). All tRNAs had a typical secondary cloverleaf structure, except for trnS1 which lacked the dihydrouridine arm. The Bayesian phylogenetic analysis based on mitogenomic data supported a sister relationship of P. viridissima and Nezara viridula from the same tribe Nezarini and recovered a phylogeny of Pentatominae: (Menidini + (Strachiini + (Pentatomini + ((Cappaeini + Halyini) + (Eysarcorini + (Nezarini + Carpocori)))))). Taylor & Francis 2021-04-08 /pmc/articles/PMC8043517/ /pubmed/33889740 http://dx.doi.org/10.1080/23802359.2021.1909442 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Chen, Wen-Ting
Zhang, Li-Jun
Cao, Ya
Yuan, Ming-Long
The complete mitochondrial genome of Palomena viridissima (Hemiptera: Pentatomidae) and phylogenetic analysis
title The complete mitochondrial genome of Palomena viridissima (Hemiptera: Pentatomidae) and phylogenetic analysis
title_full The complete mitochondrial genome of Palomena viridissima (Hemiptera: Pentatomidae) and phylogenetic analysis
title_fullStr The complete mitochondrial genome of Palomena viridissima (Hemiptera: Pentatomidae) and phylogenetic analysis
title_full_unstemmed The complete mitochondrial genome of Palomena viridissima (Hemiptera: Pentatomidae) and phylogenetic analysis
title_short The complete mitochondrial genome of Palomena viridissima (Hemiptera: Pentatomidae) and phylogenetic analysis
title_sort complete mitochondrial genome of palomena viridissima (hemiptera: pentatomidae) and phylogenetic analysis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8043517/
https://www.ncbi.nlm.nih.gov/pubmed/33889740
http://dx.doi.org/10.1080/23802359.2021.1909442
work_keys_str_mv AT chenwenting thecompletemitochondrialgenomeofpalomenaviridissimahemipterapentatomidaeandphylogeneticanalysis
AT zhanglijun thecompletemitochondrialgenomeofpalomenaviridissimahemipterapentatomidaeandphylogeneticanalysis
AT caoya thecompletemitochondrialgenomeofpalomenaviridissimahemipterapentatomidaeandphylogeneticanalysis
AT yuanminglong thecompletemitochondrialgenomeofpalomenaviridissimahemipterapentatomidaeandphylogeneticanalysis
AT chenwenting completemitochondrialgenomeofpalomenaviridissimahemipterapentatomidaeandphylogeneticanalysis
AT zhanglijun completemitochondrialgenomeofpalomenaviridissimahemipterapentatomidaeandphylogeneticanalysis
AT caoya completemitochondrialgenomeofpalomenaviridissimahemipterapentatomidaeandphylogeneticanalysis
AT yuanminglong completemitochondrialgenomeofpalomenaviridissimahemipterapentatomidaeandphylogeneticanalysis