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The complete chloroplast genome of Viburnum sargentii Koehne (Adoxaceae)
Viburnum sargentii Koehne is widely used for garden greening and also displays excellent medicinal value in China. However, the phylogenetic relationship between V. sargentii and other Adoxaceae members remains unknown. In this research, the complete chloroplast genome of V. sargentii was obtained b...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8043549/ https://www.ncbi.nlm.nih.gov/pubmed/33889741 http://dx.doi.org/10.1080/23802359.2021.1910087 |
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author | Gu, Lei Wang, Guangyi Weng, Qingbei |
author_facet | Gu, Lei Wang, Guangyi Weng, Qingbei |
author_sort | Gu, Lei |
collection | PubMed |
description | Viburnum sargentii Koehne is widely used for garden greening and also displays excellent medicinal value in China. However, the phylogenetic relationship between V. sargentii and other Adoxaceae members remains unknown. In this research, the complete chloroplast genome of V. sargentii was obtained by the high-throughput Illumina pair-end sequencing data. The chloroplast genome shows a typically quadripartite structure with 158,524 bp in size, including a large single-copy (LSC) region of 87,087 bp and a small single-copy (SSC) region of 18,489 bp, which were separated by two inverted repeat (IR) regions (26,474 bp each). A total of 128 genes were predicted, including 8 ribosomal RNAs (rRNAs), 37 transfer RNAs (tRNAs), and 83 protein-coding genes (PCGs). Maximum-likelihood phylogenetic analysis revealed that V. sargentii was clustered in the Viburnum genus and in a sister position to Viburnum japonicum, Viburnum erosum, Viburnum fordiae, and Viburnum betulifolium. This study provides useful information for future genetic study of V. sargentii. |
format | Online Article Text |
id | pubmed-8043549 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-80435492021-04-21 The complete chloroplast genome of Viburnum sargentii Koehne (Adoxaceae) Gu, Lei Wang, Guangyi Weng, Qingbei Mitochondrial DNA B Resour Mitogenome Announcement Viburnum sargentii Koehne is widely used for garden greening and also displays excellent medicinal value in China. However, the phylogenetic relationship between V. sargentii and other Adoxaceae members remains unknown. In this research, the complete chloroplast genome of V. sargentii was obtained by the high-throughput Illumina pair-end sequencing data. The chloroplast genome shows a typically quadripartite structure with 158,524 bp in size, including a large single-copy (LSC) region of 87,087 bp and a small single-copy (SSC) region of 18,489 bp, which were separated by two inverted repeat (IR) regions (26,474 bp each). A total of 128 genes were predicted, including 8 ribosomal RNAs (rRNAs), 37 transfer RNAs (tRNAs), and 83 protein-coding genes (PCGs). Maximum-likelihood phylogenetic analysis revealed that V. sargentii was clustered in the Viburnum genus and in a sister position to Viburnum japonicum, Viburnum erosum, Viburnum fordiae, and Viburnum betulifolium. This study provides useful information for future genetic study of V. sargentii. Taylor & Francis 2021-04-08 /pmc/articles/PMC8043549/ /pubmed/33889741 http://dx.doi.org/10.1080/23802359.2021.1910087 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Gu, Lei Wang, Guangyi Weng, Qingbei The complete chloroplast genome of Viburnum sargentii Koehne (Adoxaceae) |
title | The complete chloroplast genome of Viburnum sargentii Koehne (Adoxaceae) |
title_full | The complete chloroplast genome of Viburnum sargentii Koehne (Adoxaceae) |
title_fullStr | The complete chloroplast genome of Viburnum sargentii Koehne (Adoxaceae) |
title_full_unstemmed | The complete chloroplast genome of Viburnum sargentii Koehne (Adoxaceae) |
title_short | The complete chloroplast genome of Viburnum sargentii Koehne (Adoxaceae) |
title_sort | complete chloroplast genome of viburnum sargentii koehne (adoxaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8043549/ https://www.ncbi.nlm.nih.gov/pubmed/33889741 http://dx.doi.org/10.1080/23802359.2021.1910087 |
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