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The complete chloroplast genome of pioneering plant Cyperus iria L. (Cyperaceae) in ecological restoration
Cyperus iria L. is an annual weed of the family Cyperaceae, which plays an important role in the environmental remediation of uranium contaminate. Here, the complete chloroplast (cp) genome of Cyperus iria has been reconstructed from the complete genome Illumina sequencing data. The complete cp geno...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8043553/ https://www.ncbi.nlm.nih.gov/pubmed/33889743 http://dx.doi.org/10.1080/23802359.2021.1908865 |
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author | Yang, Ling-ling Niu, Jun-qi Tang, Wen-wei |
author_facet | Yang, Ling-ling Niu, Jun-qi Tang, Wen-wei |
author_sort | Yang, Ling-ling |
collection | PubMed |
description | Cyperus iria L. is an annual weed of the family Cyperaceae, which plays an important role in the environmental remediation of uranium contaminate. Here, the complete chloroplast (cp) genome of Cyperus iria has been reconstructed from the complete genome Illumina sequencing data. The complete cp genome was 185,697 bp in length, containing a large single copy region (LSC) of 99,360 bp and a small single copy region (SSC) of 10,267 bp, which were separated by a pair of 38,035 bp inverted repeat regions (IRs). The cp genome contained 135 genes, including 89 protein-coding genes (PCGs), eight rRNA genes, and 38 tRNA genes. The cp genome has a GC content of 33.16%. Further, the phylogenetic analysis showed a strong sister relationship with Cyperus rotundus. |
format | Online Article Text |
id | pubmed-8043553 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-80435532021-04-21 The complete chloroplast genome of pioneering plant Cyperus iria L. (Cyperaceae) in ecological restoration Yang, Ling-ling Niu, Jun-qi Tang, Wen-wei Mitochondrial DNA B Resour Mitogenome Announcement Cyperus iria L. is an annual weed of the family Cyperaceae, which plays an important role in the environmental remediation of uranium contaminate. Here, the complete chloroplast (cp) genome of Cyperus iria has been reconstructed from the complete genome Illumina sequencing data. The complete cp genome was 185,697 bp in length, containing a large single copy region (LSC) of 99,360 bp and a small single copy region (SSC) of 10,267 bp, which were separated by a pair of 38,035 bp inverted repeat regions (IRs). The cp genome contained 135 genes, including 89 protein-coding genes (PCGs), eight rRNA genes, and 38 tRNA genes. The cp genome has a GC content of 33.16%. Further, the phylogenetic analysis showed a strong sister relationship with Cyperus rotundus. Taylor & Francis 2021-04-08 /pmc/articles/PMC8043553/ /pubmed/33889743 http://dx.doi.org/10.1080/23802359.2021.1908865 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Yang, Ling-ling Niu, Jun-qi Tang, Wen-wei The complete chloroplast genome of pioneering plant Cyperus iria L. (Cyperaceae) in ecological restoration |
title | The complete chloroplast genome of pioneering plant Cyperus iria L. (Cyperaceae) in ecological restoration |
title_full | The complete chloroplast genome of pioneering plant Cyperus iria L. (Cyperaceae) in ecological restoration |
title_fullStr | The complete chloroplast genome of pioneering plant Cyperus iria L. (Cyperaceae) in ecological restoration |
title_full_unstemmed | The complete chloroplast genome of pioneering plant Cyperus iria L. (Cyperaceae) in ecological restoration |
title_short | The complete chloroplast genome of pioneering plant Cyperus iria L. (Cyperaceae) in ecological restoration |
title_sort | complete chloroplast genome of pioneering plant cyperus iria l. (cyperaceae) in ecological restoration |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8043553/ https://www.ncbi.nlm.nih.gov/pubmed/33889743 http://dx.doi.org/10.1080/23802359.2021.1908865 |
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