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A review and comparison of breast tumor cell nuclei segmentation performances using deep convolutional neural networks

Breast cancer is currently the second most common cause of cancer-related death in women. Presently, the clinical benchmark in cancer diagnosis is tissue biopsy examination. However, the manual process of histopathological analysis is laborious, time-consuming, and limited by the quality of the spec...

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Autores principales: Lagree, Andrew, Mohebpour, Majidreza, Meti, Nicholas, Saednia, Khadijeh, Lu, Fang-I., Slodkowska, Elzbieta, Gandhi, Sonal, Rakovitch, Eileen, Shenfield, Alex, Sadeghi-Naini, Ali, Tran, William T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8044238/
https://www.ncbi.nlm.nih.gov/pubmed/33850222
http://dx.doi.org/10.1038/s41598-021-87496-1
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author Lagree, Andrew
Mohebpour, Majidreza
Meti, Nicholas
Saednia, Khadijeh
Lu, Fang-I.
Slodkowska, Elzbieta
Gandhi, Sonal
Rakovitch, Eileen
Shenfield, Alex
Sadeghi-Naini, Ali
Tran, William T.
author_facet Lagree, Andrew
Mohebpour, Majidreza
Meti, Nicholas
Saednia, Khadijeh
Lu, Fang-I.
Slodkowska, Elzbieta
Gandhi, Sonal
Rakovitch, Eileen
Shenfield, Alex
Sadeghi-Naini, Ali
Tran, William T.
author_sort Lagree, Andrew
collection PubMed
description Breast cancer is currently the second most common cause of cancer-related death in women. Presently, the clinical benchmark in cancer diagnosis is tissue biopsy examination. However, the manual process of histopathological analysis is laborious, time-consuming, and limited by the quality of the specimen and the experience of the pathologist. This study's objective was to determine if deep convolutional neural networks can be trained, with transfer learning, on a set of histopathological images independent of breast tissue to segment tumor nuclei of the breast. Various deep convolutional neural networks were evaluated for the study, including U-Net, Mask R-CNN, and a novel network (GB U-Net). The networks were trained on a set of Hematoxylin and Eosin (H&E)-stained images of eight diverse types of tissues. GB U-Net demonstrated superior performance in segmenting sites of invasive diseases (AJI = 0.53, mAP = 0.39 & AJI = 0.54, mAP = 0.38), validated on two hold-out datasets exclusively containing breast tissue images of approximately 7,582 annotated cells. The results of the networks, trained on images independent of breast tissue, demonstrated that tumor nuclei of the breast could be accurately segmented.
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spelling pubmed-80442382021-04-15 A review and comparison of breast tumor cell nuclei segmentation performances using deep convolutional neural networks Lagree, Andrew Mohebpour, Majidreza Meti, Nicholas Saednia, Khadijeh Lu, Fang-I. Slodkowska, Elzbieta Gandhi, Sonal Rakovitch, Eileen Shenfield, Alex Sadeghi-Naini, Ali Tran, William T. Sci Rep Article Breast cancer is currently the second most common cause of cancer-related death in women. Presently, the clinical benchmark in cancer diagnosis is tissue biopsy examination. However, the manual process of histopathological analysis is laborious, time-consuming, and limited by the quality of the specimen and the experience of the pathologist. This study's objective was to determine if deep convolutional neural networks can be trained, with transfer learning, on a set of histopathological images independent of breast tissue to segment tumor nuclei of the breast. Various deep convolutional neural networks were evaluated for the study, including U-Net, Mask R-CNN, and a novel network (GB U-Net). The networks were trained on a set of Hematoxylin and Eosin (H&E)-stained images of eight diverse types of tissues. GB U-Net demonstrated superior performance in segmenting sites of invasive diseases (AJI = 0.53, mAP = 0.39 & AJI = 0.54, mAP = 0.38), validated on two hold-out datasets exclusively containing breast tissue images of approximately 7,582 annotated cells. The results of the networks, trained on images independent of breast tissue, demonstrated that tumor nuclei of the breast could be accurately segmented. Nature Publishing Group UK 2021-04-13 /pmc/articles/PMC8044238/ /pubmed/33850222 http://dx.doi.org/10.1038/s41598-021-87496-1 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Lagree, Andrew
Mohebpour, Majidreza
Meti, Nicholas
Saednia, Khadijeh
Lu, Fang-I.
Slodkowska, Elzbieta
Gandhi, Sonal
Rakovitch, Eileen
Shenfield, Alex
Sadeghi-Naini, Ali
Tran, William T.
A review and comparison of breast tumor cell nuclei segmentation performances using deep convolutional neural networks
title A review and comparison of breast tumor cell nuclei segmentation performances using deep convolutional neural networks
title_full A review and comparison of breast tumor cell nuclei segmentation performances using deep convolutional neural networks
title_fullStr A review and comparison of breast tumor cell nuclei segmentation performances using deep convolutional neural networks
title_full_unstemmed A review and comparison of breast tumor cell nuclei segmentation performances using deep convolutional neural networks
title_short A review and comparison of breast tumor cell nuclei segmentation performances using deep convolutional neural networks
title_sort review and comparison of breast tumor cell nuclei segmentation performances using deep convolutional neural networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8044238/
https://www.ncbi.nlm.nih.gov/pubmed/33850222
http://dx.doi.org/10.1038/s41598-021-87496-1
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