Cargando…

Identification of IFN-Induced Transmembrane Protein 1 With Prognostic Value in Pancreatic Cancer Using Network Module-Based Analysis

Despite improvements reported in diagnosis and treatments in recent decades, pancreatic cancer is still characterized by poor prognosis and low survival rate among solid tumors. Intensive interests have grown in exploring novel predictive biomarkers, aiming to enhance the efficiency in early detecti...

Descripción completa

Detalles Bibliográficos
Autores principales: Wu, Lingyun, Zhu, Xinli, Yan, Danfang, Tang, Mengmeng, Ma, Chiyuan, Yan, Senxiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8044951/
https://www.ncbi.nlm.nih.gov/pubmed/33869009
http://dx.doi.org/10.3389/fonc.2021.626883
_version_ 1783678601507373056
author Wu, Lingyun
Zhu, Xinli
Yan, Danfang
Tang, Mengmeng
Ma, Chiyuan
Yan, Senxiang
author_facet Wu, Lingyun
Zhu, Xinli
Yan, Danfang
Tang, Mengmeng
Ma, Chiyuan
Yan, Senxiang
author_sort Wu, Lingyun
collection PubMed
description Despite improvements reported in diagnosis and treatments in recent decades, pancreatic cancer is still characterized by poor prognosis and low survival rate among solid tumors. Intensive interests have grown in exploring novel predictive biomarkers, aiming to enhance the efficiency in early detection and treatment prognosis. In this study, we identified the differentially expressed genes (DEGs) in pancreatic cancer by analyzing five gene expression profiles and established the functional modules according to the functional interaction (FI) network between the DEGs. A significant upregulation of the selected DEG, interferon (IFN)-induced transmembrane protein 1 (IFITM1), was evaluated in several bioinformatics online tools and verified with immunohistochemistry staining from samples of 90 patients with pancreatic cancer. Prognostic data showed that high expression of IFITM1 associated with poor survival, and multivariate Cox regression analysis showed IFITM1 was one of the independent prognostic factors for overall survival. Meanwhile, significant correlations of the expression of IFITM1 and the infiltration of immune cells were found by TIMER. Furthermore, a higher level of IFITM1 was assessed in pancreatic cancer cell lines compared to normal human pancreatic duct epithelial cells, and silencing IFITM1 in tumor cells remarkedly inhibited cancer tumorigenicity. Collectively, our findings suggested that IFITM1 might have promising utility for pancreatic cancer.
format Online
Article
Text
id pubmed-8044951
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-80449512021-04-15 Identification of IFN-Induced Transmembrane Protein 1 With Prognostic Value in Pancreatic Cancer Using Network Module-Based Analysis Wu, Lingyun Zhu, Xinli Yan, Danfang Tang, Mengmeng Ma, Chiyuan Yan, Senxiang Front Oncol Oncology Despite improvements reported in diagnosis and treatments in recent decades, pancreatic cancer is still characterized by poor prognosis and low survival rate among solid tumors. Intensive interests have grown in exploring novel predictive biomarkers, aiming to enhance the efficiency in early detection and treatment prognosis. In this study, we identified the differentially expressed genes (DEGs) in pancreatic cancer by analyzing five gene expression profiles and established the functional modules according to the functional interaction (FI) network between the DEGs. A significant upregulation of the selected DEG, interferon (IFN)-induced transmembrane protein 1 (IFITM1), was evaluated in several bioinformatics online tools and verified with immunohistochemistry staining from samples of 90 patients with pancreatic cancer. Prognostic data showed that high expression of IFITM1 associated with poor survival, and multivariate Cox regression analysis showed IFITM1 was one of the independent prognostic factors for overall survival. Meanwhile, significant correlations of the expression of IFITM1 and the infiltration of immune cells were found by TIMER. Furthermore, a higher level of IFITM1 was assessed in pancreatic cancer cell lines compared to normal human pancreatic duct epithelial cells, and silencing IFITM1 in tumor cells remarkedly inhibited cancer tumorigenicity. Collectively, our findings suggested that IFITM1 might have promising utility for pancreatic cancer. Frontiers Media S.A. 2021-03-22 /pmc/articles/PMC8044951/ /pubmed/33869009 http://dx.doi.org/10.3389/fonc.2021.626883 Text en Copyright © 2021 Wu, Zhu, Yan, Tang, Ma and Yan. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Wu, Lingyun
Zhu, Xinli
Yan, Danfang
Tang, Mengmeng
Ma, Chiyuan
Yan, Senxiang
Identification of IFN-Induced Transmembrane Protein 1 With Prognostic Value in Pancreatic Cancer Using Network Module-Based Analysis
title Identification of IFN-Induced Transmembrane Protein 1 With Prognostic Value in Pancreatic Cancer Using Network Module-Based Analysis
title_full Identification of IFN-Induced Transmembrane Protein 1 With Prognostic Value in Pancreatic Cancer Using Network Module-Based Analysis
title_fullStr Identification of IFN-Induced Transmembrane Protein 1 With Prognostic Value in Pancreatic Cancer Using Network Module-Based Analysis
title_full_unstemmed Identification of IFN-Induced Transmembrane Protein 1 With Prognostic Value in Pancreatic Cancer Using Network Module-Based Analysis
title_short Identification of IFN-Induced Transmembrane Protein 1 With Prognostic Value in Pancreatic Cancer Using Network Module-Based Analysis
title_sort identification of ifn-induced transmembrane protein 1 with prognostic value in pancreatic cancer using network module-based analysis
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8044951/
https://www.ncbi.nlm.nih.gov/pubmed/33869009
http://dx.doi.org/10.3389/fonc.2021.626883
work_keys_str_mv AT wulingyun identificationofifninducedtransmembraneprotein1withprognosticvalueinpancreaticcancerusingnetworkmodulebasedanalysis
AT zhuxinli identificationofifninducedtransmembraneprotein1withprognosticvalueinpancreaticcancerusingnetworkmodulebasedanalysis
AT yandanfang identificationofifninducedtransmembraneprotein1withprognosticvalueinpancreaticcancerusingnetworkmodulebasedanalysis
AT tangmengmeng identificationofifninducedtransmembraneprotein1withprognosticvalueinpancreaticcancerusingnetworkmodulebasedanalysis
AT machiyuan identificationofifninducedtransmembraneprotein1withprognosticvalueinpancreaticcancerusingnetworkmodulebasedanalysis
AT yansenxiang identificationofifninducedtransmembraneprotein1withprognosticvalueinpancreaticcancerusingnetworkmodulebasedanalysis