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Key drug-targeting genes in pancreatic ductal adenocarcinoma
Pancreatic ductal adenocarcinoma (PDAC) is a highly lethal type of cancer. In this study, we undertook a pairwise comparison of gene expression pattern between tumor tissue and its matching adjacent normal tissue for 45 PDAC patients and identified 22 upregulated and 32 downregulated genes. PPI netw...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals LLC
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8045979/ https://www.ncbi.nlm.nih.gov/pubmed/33884102 http://dx.doi.org/10.18632/genesandcancer.210 |
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author | Sakharkar, Meena Kishore Dhillon, Sarinder Kaur Mazumder, Mohit Yang, Jian |
author_facet | Sakharkar, Meena Kishore Dhillon, Sarinder Kaur Mazumder, Mohit Yang, Jian |
author_sort | Sakharkar, Meena Kishore |
collection | PubMed |
description | Pancreatic ductal adenocarcinoma (PDAC) is a highly lethal type of cancer. In this study, we undertook a pairwise comparison of gene expression pattern between tumor tissue and its matching adjacent normal tissue for 45 PDAC patients and identified 22 upregulated and 32 downregulated genes. PPI network revealed that fibronectin 1 and serpin peptidase inhibitor B5 were the most interconnected upregulated-nodes. Virtual screening identified bleomycin exhibited reasonably strong binding to both proteins. Effect of bleomycin on cell viability was examined against two PDAC cell lines, AsPC-1 and MIA PaCa-2. AsPC-1 did not respond to bleomycin, however, MIA PaCa-2 responded to bleomycin with an IC(50) of 2.6 μM. This implicates that bleomycin could be repurposed for the treatment of PDAC, especially in combination with other chemotherapy agents. In vivo mouse xenograft studies and patient clinical trials are warranted to understand the functional mechanism of bleomycin towards PDAC and optimize its therapeutic efficacy. Furthermore, we will evaluate the antitumor activity of the other identified drugs in our future studies. |
format | Online Article Text |
id | pubmed-8045979 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Impact Journals LLC |
record_format | MEDLINE/PubMed |
spelling | pubmed-80459792021-04-20 Key drug-targeting genes in pancreatic ductal adenocarcinoma Sakharkar, Meena Kishore Dhillon, Sarinder Kaur Mazumder, Mohit Yang, Jian Genes Cancer Research Paper Pancreatic ductal adenocarcinoma (PDAC) is a highly lethal type of cancer. In this study, we undertook a pairwise comparison of gene expression pattern between tumor tissue and its matching adjacent normal tissue for 45 PDAC patients and identified 22 upregulated and 32 downregulated genes. PPI network revealed that fibronectin 1 and serpin peptidase inhibitor B5 were the most interconnected upregulated-nodes. Virtual screening identified bleomycin exhibited reasonably strong binding to both proteins. Effect of bleomycin on cell viability was examined against two PDAC cell lines, AsPC-1 and MIA PaCa-2. AsPC-1 did not respond to bleomycin, however, MIA PaCa-2 responded to bleomycin with an IC(50) of 2.6 μM. This implicates that bleomycin could be repurposed for the treatment of PDAC, especially in combination with other chemotherapy agents. In vivo mouse xenograft studies and patient clinical trials are warranted to understand the functional mechanism of bleomycin towards PDAC and optimize its therapeutic efficacy. Furthermore, we will evaluate the antitumor activity of the other identified drugs in our future studies. Impact Journals LLC 2021-03-11 /pmc/articles/PMC8045979/ /pubmed/33884102 http://dx.doi.org/10.18632/genesandcancer.210 Text en Copyright: © 2021 Sakharkar et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Sakharkar, Meena Kishore Dhillon, Sarinder Kaur Mazumder, Mohit Yang, Jian Key drug-targeting genes in pancreatic ductal adenocarcinoma |
title | Key drug-targeting genes in pancreatic ductal adenocarcinoma |
title_full | Key drug-targeting genes in pancreatic ductal adenocarcinoma |
title_fullStr | Key drug-targeting genes in pancreatic ductal adenocarcinoma |
title_full_unstemmed | Key drug-targeting genes in pancreatic ductal adenocarcinoma |
title_short | Key drug-targeting genes in pancreatic ductal adenocarcinoma |
title_sort | key drug-targeting genes in pancreatic ductal adenocarcinoma |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8045979/ https://www.ncbi.nlm.nih.gov/pubmed/33884102 http://dx.doi.org/10.18632/genesandcancer.210 |
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