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Key drug-targeting genes in pancreatic ductal adenocarcinoma

Pancreatic ductal adenocarcinoma (PDAC) is a highly lethal type of cancer. In this study, we undertook a pairwise comparison of gene expression pattern between tumor tissue and its matching adjacent normal tissue for 45 PDAC patients and identified 22 upregulated and 32 downregulated genes. PPI netw...

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Autores principales: Sakharkar, Meena Kishore, Dhillon, Sarinder Kaur, Mazumder, Mohit, Yang, Jian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals LLC 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8045979/
https://www.ncbi.nlm.nih.gov/pubmed/33884102
http://dx.doi.org/10.18632/genesandcancer.210
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author Sakharkar, Meena Kishore
Dhillon, Sarinder Kaur
Mazumder, Mohit
Yang, Jian
author_facet Sakharkar, Meena Kishore
Dhillon, Sarinder Kaur
Mazumder, Mohit
Yang, Jian
author_sort Sakharkar, Meena Kishore
collection PubMed
description Pancreatic ductal adenocarcinoma (PDAC) is a highly lethal type of cancer. In this study, we undertook a pairwise comparison of gene expression pattern between tumor tissue and its matching adjacent normal tissue for 45 PDAC patients and identified 22 upregulated and 32 downregulated genes. PPI network revealed that fibronectin 1 and serpin peptidase inhibitor B5 were the most interconnected upregulated-nodes. Virtual screening identified bleomycin exhibited reasonably strong binding to both proteins. Effect of bleomycin on cell viability was examined against two PDAC cell lines, AsPC-1 and MIA PaCa-2. AsPC-1 did not respond to bleomycin, however, MIA PaCa-2 responded to bleomycin with an IC(50) of 2.6 μM. This implicates that bleomycin could be repurposed for the treatment of PDAC, especially in combination with other chemotherapy agents. In vivo mouse xenograft studies and patient clinical trials are warranted to understand the functional mechanism of bleomycin towards PDAC and optimize its therapeutic efficacy. Furthermore, we will evaluate the antitumor activity of the other identified drugs in our future studies.
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spelling pubmed-80459792021-04-20 Key drug-targeting genes in pancreatic ductal adenocarcinoma Sakharkar, Meena Kishore Dhillon, Sarinder Kaur Mazumder, Mohit Yang, Jian Genes Cancer Research Paper Pancreatic ductal adenocarcinoma (PDAC) is a highly lethal type of cancer. In this study, we undertook a pairwise comparison of gene expression pattern between tumor tissue and its matching adjacent normal tissue for 45 PDAC patients and identified 22 upregulated and 32 downregulated genes. PPI network revealed that fibronectin 1 and serpin peptidase inhibitor B5 were the most interconnected upregulated-nodes. Virtual screening identified bleomycin exhibited reasonably strong binding to both proteins. Effect of bleomycin on cell viability was examined against two PDAC cell lines, AsPC-1 and MIA PaCa-2. AsPC-1 did not respond to bleomycin, however, MIA PaCa-2 responded to bleomycin with an IC(50) of 2.6 μM. This implicates that bleomycin could be repurposed for the treatment of PDAC, especially in combination with other chemotherapy agents. In vivo mouse xenograft studies and patient clinical trials are warranted to understand the functional mechanism of bleomycin towards PDAC and optimize its therapeutic efficacy. Furthermore, we will evaluate the antitumor activity of the other identified drugs in our future studies. Impact Journals LLC 2021-03-11 /pmc/articles/PMC8045979/ /pubmed/33884102 http://dx.doi.org/10.18632/genesandcancer.210 Text en Copyright: © 2021 Sakharkar et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Sakharkar, Meena Kishore
Dhillon, Sarinder Kaur
Mazumder, Mohit
Yang, Jian
Key drug-targeting genes in pancreatic ductal adenocarcinoma
title Key drug-targeting genes in pancreatic ductal adenocarcinoma
title_full Key drug-targeting genes in pancreatic ductal adenocarcinoma
title_fullStr Key drug-targeting genes in pancreatic ductal adenocarcinoma
title_full_unstemmed Key drug-targeting genes in pancreatic ductal adenocarcinoma
title_short Key drug-targeting genes in pancreatic ductal adenocarcinoma
title_sort key drug-targeting genes in pancreatic ductal adenocarcinoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8045979/
https://www.ncbi.nlm.nih.gov/pubmed/33884102
http://dx.doi.org/10.18632/genesandcancer.210
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