Rapid Open-Source SNP-Based Clustering Offers an Alternative to Core Genome MLST for Outbreak Tracing in a Hospital Setting

Traditional genotyping methods for infection control of antimicrobial-resistant bacteria in healthcare settings have been supplemented by whole-genome sequencing (WGS), often relying on a gene-based approach, e.g., core genome multilocus sequence typing (cgMLST), to cluster-related samples. In this...

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Detalles Bibliográficos
Autores principales: Szarvas, Judit, Bartels, Mette Damkjaer, Westh, Henrik, Lund, Ole
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Microbiology
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8047125/
https://www.ncbi.nlm.nih.gov/pubmed/33868194
http://dx.doi.org/10.3389/fmicb.2021.636608

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8047125/
https://www.ncbi.nlm.nih.gov/pubmed/33868194
http://dx.doi.org/10.3389/fmicb.2021.636608

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