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Three Immune-Related Prognostic mRNAs as Therapeutic Targets for Pancreatic Cancer
Objective: Pancreatic cancer is a highly lethal malignancy globally. This study aimed to probe and validate immune-related prognostic mRNAs as therapeutic targets for pancreatic cancer. Methods: Gene transcriptome data of pancreatic cancer and normal pancreas were retrieved from TCGA-GTEx projects....
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8047149/ https://www.ncbi.nlm.nih.gov/pubmed/33869254 http://dx.doi.org/10.3389/fmed.2021.649326 |
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author | Zhang, Cangang Zou, Yueji Zhu, Yanan Liu, Yi Feng, Hui Niu, Fan He, Pengcheng Liu, Haibo |
author_facet | Zhang, Cangang Zou, Yueji Zhu, Yanan Liu, Yi Feng, Hui Niu, Fan He, Pengcheng Liu, Haibo |
author_sort | Zhang, Cangang |
collection | PubMed |
description | Objective: Pancreatic cancer is a highly lethal malignancy globally. This study aimed to probe and validate immune-related prognostic mRNAs as therapeutic targets for pancreatic cancer. Methods: Gene transcriptome data of pancreatic cancer and normal pancreas were retrieved from TCGA-GTEx projects. Two thousand four hundred and ninety-eight immune-related genes were obtained from the IMMUPORT database. Abnormally expressed immune-related genes were then identified. Under univariate and multivariate cox models, a gene signature was constructed. Its predictive efficacy was assessed via ROCs. The interactions between the 21 genes were analyzed by Spearson analysis and PPI network. Using the GEPIA and The Human Protein Atlas databases, their expression and prognostic value were evaluated. The TIMER database was utilized to determine the relationships between MET, OAS1, and OASL mRNAs and immune infiltrates. Finally, their mRNA expression was externally verified in the GSE15471 and GSE62452 datasets. Results: An immune-related 21-gene signature was developed for predicting patients' prognosis. Following verification, this signature exhibited the well predictive performance. There were physical and functional interactions between them. MET, OAS1, and OASL mRNAs were all up-regulated in pancreatic cancer and associated with unfavorable prognosis. They showed strong correlations with tumor progression. Furthermore, the three mRNAs were distinctly associated with immune infiltrates. Their up-regulation was confirmed in the two external datasets. Conclusion: These findings identified three immune-related prognostic mRNAs MET, OAS1, and OASL, which may assist clinicians to choose targets for immunotherapy and make personalized treatment strategy for pancreatic cancer patients. |
format | Online Article Text |
id | pubmed-8047149 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-80471492021-04-16 Three Immune-Related Prognostic mRNAs as Therapeutic Targets for Pancreatic Cancer Zhang, Cangang Zou, Yueji Zhu, Yanan Liu, Yi Feng, Hui Niu, Fan He, Pengcheng Liu, Haibo Front Med (Lausanne) Medicine Objective: Pancreatic cancer is a highly lethal malignancy globally. This study aimed to probe and validate immune-related prognostic mRNAs as therapeutic targets for pancreatic cancer. Methods: Gene transcriptome data of pancreatic cancer and normal pancreas were retrieved from TCGA-GTEx projects. Two thousand four hundred and ninety-eight immune-related genes were obtained from the IMMUPORT database. Abnormally expressed immune-related genes were then identified. Under univariate and multivariate cox models, a gene signature was constructed. Its predictive efficacy was assessed via ROCs. The interactions between the 21 genes were analyzed by Spearson analysis and PPI network. Using the GEPIA and The Human Protein Atlas databases, their expression and prognostic value were evaluated. The TIMER database was utilized to determine the relationships between MET, OAS1, and OASL mRNAs and immune infiltrates. Finally, their mRNA expression was externally verified in the GSE15471 and GSE62452 datasets. Results: An immune-related 21-gene signature was developed for predicting patients' prognosis. Following verification, this signature exhibited the well predictive performance. There were physical and functional interactions between them. MET, OAS1, and OASL mRNAs were all up-regulated in pancreatic cancer and associated with unfavorable prognosis. They showed strong correlations with tumor progression. Furthermore, the three mRNAs were distinctly associated with immune infiltrates. Their up-regulation was confirmed in the two external datasets. Conclusion: These findings identified three immune-related prognostic mRNAs MET, OAS1, and OASL, which may assist clinicians to choose targets for immunotherapy and make personalized treatment strategy for pancreatic cancer patients. Frontiers Media S.A. 2021-04-01 /pmc/articles/PMC8047149/ /pubmed/33869254 http://dx.doi.org/10.3389/fmed.2021.649326 Text en Copyright © 2021 Zhang, Zou, Zhu, Liu, Feng, Niu, He and Liu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Medicine Zhang, Cangang Zou, Yueji Zhu, Yanan Liu, Yi Feng, Hui Niu, Fan He, Pengcheng Liu, Haibo Three Immune-Related Prognostic mRNAs as Therapeutic Targets for Pancreatic Cancer |
title | Three Immune-Related Prognostic mRNAs as Therapeutic Targets for Pancreatic Cancer |
title_full | Three Immune-Related Prognostic mRNAs as Therapeutic Targets for Pancreatic Cancer |
title_fullStr | Three Immune-Related Prognostic mRNAs as Therapeutic Targets for Pancreatic Cancer |
title_full_unstemmed | Three Immune-Related Prognostic mRNAs as Therapeutic Targets for Pancreatic Cancer |
title_short | Three Immune-Related Prognostic mRNAs as Therapeutic Targets for Pancreatic Cancer |
title_sort | three immune-related prognostic mrnas as therapeutic targets for pancreatic cancer |
topic | Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8047149/ https://www.ncbi.nlm.nih.gov/pubmed/33869254 http://dx.doi.org/10.3389/fmed.2021.649326 |
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