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GraphCovidNet: A graph neural network based model for detecting COVID-19 from CT scans and X-rays of chest

COVID-19, a viral infection originated from Wuhan, China has spread across the world and it has currently affected over 115 million people. Although vaccination process has already started, reaching sufficient availability will take time. Considering the impact of this widespread disease, many resea...

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Autores principales: Saha, Pritam, Mukherjee, Debadyuti, Singh, Pawan Kumar, Ahmadian, Ali, Ferrara, Massimiliano, Sarkar, Ram
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8050058/
https://www.ncbi.nlm.nih.gov/pubmed/33859222
http://dx.doi.org/10.1038/s41598-021-87523-1
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author Saha, Pritam
Mukherjee, Debadyuti
Singh, Pawan Kumar
Ahmadian, Ali
Ferrara, Massimiliano
Sarkar, Ram
author_facet Saha, Pritam
Mukherjee, Debadyuti
Singh, Pawan Kumar
Ahmadian, Ali
Ferrara, Massimiliano
Sarkar, Ram
author_sort Saha, Pritam
collection PubMed
description COVID-19, a viral infection originated from Wuhan, China has spread across the world and it has currently affected over 115 million people. Although vaccination process has already started, reaching sufficient availability will take time. Considering the impact of this widespread disease, many research attempts have been made by the computer scientists to screen the COVID-19 from Chest X-Rays (CXRs) or Computed Tomography (CT) scans. To this end, we have proposed GraphCovidNet, a Graph Isomorphic Network (GIN) based model which is used to detect COVID-19 from CT-scans and CXRs of the affected patients. Our proposed model only accepts input data in the form of graph as we follow a GIN based architecture. Initially, pre-processing is performed to convert an image data into an undirected graph to consider only the edges instead of the whole image. Our proposed GraphCovidNet model is evaluated on four standard datasets: SARS-COV-2 Ct-Scan dataset, COVID-CT dataset, combination of covid-chestxray-dataset, Chest X-Ray Images (Pneumonia) dataset and CMSC-678-ML-Project dataset. The model shows an impressive accuracy of 99% for all the datasets and its prediction capability becomes 100% accurate for the binary classification problem of detecting COVID-19 scans. Source code of this work can be found at GitHub-link.
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spelling pubmed-80500582021-04-16 GraphCovidNet: A graph neural network based model for detecting COVID-19 from CT scans and X-rays of chest Saha, Pritam Mukherjee, Debadyuti Singh, Pawan Kumar Ahmadian, Ali Ferrara, Massimiliano Sarkar, Ram Sci Rep Article COVID-19, a viral infection originated from Wuhan, China has spread across the world and it has currently affected over 115 million people. Although vaccination process has already started, reaching sufficient availability will take time. Considering the impact of this widespread disease, many research attempts have been made by the computer scientists to screen the COVID-19 from Chest X-Rays (CXRs) or Computed Tomography (CT) scans. To this end, we have proposed GraphCovidNet, a Graph Isomorphic Network (GIN) based model which is used to detect COVID-19 from CT-scans and CXRs of the affected patients. Our proposed model only accepts input data in the form of graph as we follow a GIN based architecture. Initially, pre-processing is performed to convert an image data into an undirected graph to consider only the edges instead of the whole image. Our proposed GraphCovidNet model is evaluated on four standard datasets: SARS-COV-2 Ct-Scan dataset, COVID-CT dataset, combination of covid-chestxray-dataset, Chest X-Ray Images (Pneumonia) dataset and CMSC-678-ML-Project dataset. The model shows an impressive accuracy of 99% for all the datasets and its prediction capability becomes 100% accurate for the binary classification problem of detecting COVID-19 scans. Source code of this work can be found at GitHub-link. Nature Publishing Group UK 2021-04-15 /pmc/articles/PMC8050058/ /pubmed/33859222 http://dx.doi.org/10.1038/s41598-021-87523-1 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Saha, Pritam
Mukherjee, Debadyuti
Singh, Pawan Kumar
Ahmadian, Ali
Ferrara, Massimiliano
Sarkar, Ram
GraphCovidNet: A graph neural network based model for detecting COVID-19 from CT scans and X-rays of chest
title GraphCovidNet: A graph neural network based model for detecting COVID-19 from CT scans and X-rays of chest
title_full GraphCovidNet: A graph neural network based model for detecting COVID-19 from CT scans and X-rays of chest
title_fullStr GraphCovidNet: A graph neural network based model for detecting COVID-19 from CT scans and X-rays of chest
title_full_unstemmed GraphCovidNet: A graph neural network based model for detecting COVID-19 from CT scans and X-rays of chest
title_short GraphCovidNet: A graph neural network based model for detecting COVID-19 from CT scans and X-rays of chest
title_sort graphcovidnet: a graph neural network based model for detecting covid-19 from ct scans and x-rays of chest
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8050058/
https://www.ncbi.nlm.nih.gov/pubmed/33859222
http://dx.doi.org/10.1038/s41598-021-87523-1
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