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Survival time prediction by integrating cox proportional hazards network and distribution function network

BACKGROUND: The Cox proportional hazards model is commonly used to predict hazard ratio, which is the risk or probability of occurrence of an event of interest. However, the Cox proportional hazard model cannot directly generate an individual survival time. To do this, the survival analysis in the C...

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Autores principales: Baek, Eu-Tteum, Yang, Hyung Jeong, Kim, Soo Hyung, Lee, Guee Sang, Oh, In-Jae, Kang, Sae-Ryung, Min, Jung-Joon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8050908/
https://www.ncbi.nlm.nih.gov/pubmed/33858319
http://dx.doi.org/10.1186/s12859-021-04103-w
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author Baek, Eu-Tteum
Yang, Hyung Jeong
Kim, Soo Hyung
Lee, Guee Sang
Oh, In-Jae
Kang, Sae-Ryung
Min, Jung-Joon
author_facet Baek, Eu-Tteum
Yang, Hyung Jeong
Kim, Soo Hyung
Lee, Guee Sang
Oh, In-Jae
Kang, Sae-Ryung
Min, Jung-Joon
author_sort Baek, Eu-Tteum
collection PubMed
description BACKGROUND: The Cox proportional hazards model is commonly used to predict hazard ratio, which is the risk or probability of occurrence of an event of interest. However, the Cox proportional hazard model cannot directly generate an individual survival time. To do this, the survival analysis in the Cox model converts the hazard ratio to survival times through distributions such as the exponential, Weibull, Gompertz or log-normal distributions. In other words, to generate the survival time, the Cox model has to select a specific distribution over time. RESULTS: This study presents a method to predict the survival time by integrating hazard network and a distribution function network. The Cox proportional hazards network is adapted in DeepSurv for the prediction of the hazard ratio and a distribution function network applied to generate the survival time. To evaluate the performance of the proposed method, a new evaluation metric that calculates the intersection over union between the predicted curve and ground truth was proposed. To further understand significant prognostic factors, we use the 1D gradient-weighted class activation mapping method to highlight the network activations as a heat map visualization over an input data. The performance of the proposed method was experimentally verified and the results compared to other existing methods. CONCLUSIONS: Our results confirmed that the combination of the two networks, Cox proportional hazards network and distribution function network, can effectively generate accurate survival time.
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spelling pubmed-80509082021-04-19 Survival time prediction by integrating cox proportional hazards network and distribution function network Baek, Eu-Tteum Yang, Hyung Jeong Kim, Soo Hyung Lee, Guee Sang Oh, In-Jae Kang, Sae-Ryung Min, Jung-Joon BMC Bioinformatics Methodology Article BACKGROUND: The Cox proportional hazards model is commonly used to predict hazard ratio, which is the risk or probability of occurrence of an event of interest. However, the Cox proportional hazard model cannot directly generate an individual survival time. To do this, the survival analysis in the Cox model converts the hazard ratio to survival times through distributions such as the exponential, Weibull, Gompertz or log-normal distributions. In other words, to generate the survival time, the Cox model has to select a specific distribution over time. RESULTS: This study presents a method to predict the survival time by integrating hazard network and a distribution function network. The Cox proportional hazards network is adapted in DeepSurv for the prediction of the hazard ratio and a distribution function network applied to generate the survival time. To evaluate the performance of the proposed method, a new evaluation metric that calculates the intersection over union between the predicted curve and ground truth was proposed. To further understand significant prognostic factors, we use the 1D gradient-weighted class activation mapping method to highlight the network activations as a heat map visualization over an input data. The performance of the proposed method was experimentally verified and the results compared to other existing methods. CONCLUSIONS: Our results confirmed that the combination of the two networks, Cox proportional hazards network and distribution function network, can effectively generate accurate survival time. BioMed Central 2021-04-15 /pmc/articles/PMC8050908/ /pubmed/33858319 http://dx.doi.org/10.1186/s12859-021-04103-w Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Methodology Article
Baek, Eu-Tteum
Yang, Hyung Jeong
Kim, Soo Hyung
Lee, Guee Sang
Oh, In-Jae
Kang, Sae-Ryung
Min, Jung-Joon
Survival time prediction by integrating cox proportional hazards network and distribution function network
title Survival time prediction by integrating cox proportional hazards network and distribution function network
title_full Survival time prediction by integrating cox proportional hazards network and distribution function network
title_fullStr Survival time prediction by integrating cox proportional hazards network and distribution function network
title_full_unstemmed Survival time prediction by integrating cox proportional hazards network and distribution function network
title_short Survival time prediction by integrating cox proportional hazards network and distribution function network
title_sort survival time prediction by integrating cox proportional hazards network and distribution function network
topic Methodology Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8050908/
https://www.ncbi.nlm.nih.gov/pubmed/33858319
http://dx.doi.org/10.1186/s12859-021-04103-w
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