Cargando…
Survival time prediction by integrating cox proportional hazards network and distribution function network
BACKGROUND: The Cox proportional hazards model is commonly used to predict hazard ratio, which is the risk or probability of occurrence of an event of interest. However, the Cox proportional hazard model cannot directly generate an individual survival time. To do this, the survival analysis in the C...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8050908/ https://www.ncbi.nlm.nih.gov/pubmed/33858319 http://dx.doi.org/10.1186/s12859-021-04103-w |
_version_ | 1783679660356272128 |
---|---|
author | Baek, Eu-Tteum Yang, Hyung Jeong Kim, Soo Hyung Lee, Guee Sang Oh, In-Jae Kang, Sae-Ryung Min, Jung-Joon |
author_facet | Baek, Eu-Tteum Yang, Hyung Jeong Kim, Soo Hyung Lee, Guee Sang Oh, In-Jae Kang, Sae-Ryung Min, Jung-Joon |
author_sort | Baek, Eu-Tteum |
collection | PubMed |
description | BACKGROUND: The Cox proportional hazards model is commonly used to predict hazard ratio, which is the risk or probability of occurrence of an event of interest. However, the Cox proportional hazard model cannot directly generate an individual survival time. To do this, the survival analysis in the Cox model converts the hazard ratio to survival times through distributions such as the exponential, Weibull, Gompertz or log-normal distributions. In other words, to generate the survival time, the Cox model has to select a specific distribution over time. RESULTS: This study presents a method to predict the survival time by integrating hazard network and a distribution function network. The Cox proportional hazards network is adapted in DeepSurv for the prediction of the hazard ratio and a distribution function network applied to generate the survival time. To evaluate the performance of the proposed method, a new evaluation metric that calculates the intersection over union between the predicted curve and ground truth was proposed. To further understand significant prognostic factors, we use the 1D gradient-weighted class activation mapping method to highlight the network activations as a heat map visualization over an input data. The performance of the proposed method was experimentally verified and the results compared to other existing methods. CONCLUSIONS: Our results confirmed that the combination of the two networks, Cox proportional hazards network and distribution function network, can effectively generate accurate survival time. |
format | Online Article Text |
id | pubmed-8050908 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-80509082021-04-19 Survival time prediction by integrating cox proportional hazards network and distribution function network Baek, Eu-Tteum Yang, Hyung Jeong Kim, Soo Hyung Lee, Guee Sang Oh, In-Jae Kang, Sae-Ryung Min, Jung-Joon BMC Bioinformatics Methodology Article BACKGROUND: The Cox proportional hazards model is commonly used to predict hazard ratio, which is the risk or probability of occurrence of an event of interest. However, the Cox proportional hazard model cannot directly generate an individual survival time. To do this, the survival analysis in the Cox model converts the hazard ratio to survival times through distributions such as the exponential, Weibull, Gompertz or log-normal distributions. In other words, to generate the survival time, the Cox model has to select a specific distribution over time. RESULTS: This study presents a method to predict the survival time by integrating hazard network and a distribution function network. The Cox proportional hazards network is adapted in DeepSurv for the prediction of the hazard ratio and a distribution function network applied to generate the survival time. To evaluate the performance of the proposed method, a new evaluation metric that calculates the intersection over union between the predicted curve and ground truth was proposed. To further understand significant prognostic factors, we use the 1D gradient-weighted class activation mapping method to highlight the network activations as a heat map visualization over an input data. The performance of the proposed method was experimentally verified and the results compared to other existing methods. CONCLUSIONS: Our results confirmed that the combination of the two networks, Cox proportional hazards network and distribution function network, can effectively generate accurate survival time. BioMed Central 2021-04-15 /pmc/articles/PMC8050908/ /pubmed/33858319 http://dx.doi.org/10.1186/s12859-021-04103-w Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Methodology Article Baek, Eu-Tteum Yang, Hyung Jeong Kim, Soo Hyung Lee, Guee Sang Oh, In-Jae Kang, Sae-Ryung Min, Jung-Joon Survival time prediction by integrating cox proportional hazards network and distribution function network |
title | Survival time prediction by integrating cox proportional hazards network and distribution function network |
title_full | Survival time prediction by integrating cox proportional hazards network and distribution function network |
title_fullStr | Survival time prediction by integrating cox proportional hazards network and distribution function network |
title_full_unstemmed | Survival time prediction by integrating cox proportional hazards network and distribution function network |
title_short | Survival time prediction by integrating cox proportional hazards network and distribution function network |
title_sort | survival time prediction by integrating cox proportional hazards network and distribution function network |
topic | Methodology Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8050908/ https://www.ncbi.nlm.nih.gov/pubmed/33858319 http://dx.doi.org/10.1186/s12859-021-04103-w |
work_keys_str_mv | AT baekeutteum survivaltimepredictionbyintegratingcoxproportionalhazardsnetworkanddistributionfunctionnetwork AT yanghyungjeong survivaltimepredictionbyintegratingcoxproportionalhazardsnetworkanddistributionfunctionnetwork AT kimsoohyung survivaltimepredictionbyintegratingcoxproportionalhazardsnetworkanddistributionfunctionnetwork AT leegueesang survivaltimepredictionbyintegratingcoxproportionalhazardsnetworkanddistributionfunctionnetwork AT ohinjae survivaltimepredictionbyintegratingcoxproportionalhazardsnetworkanddistributionfunctionnetwork AT kangsaeryung survivaltimepredictionbyintegratingcoxproportionalhazardsnetworkanddistributionfunctionnetwork AT minjungjoon survivaltimepredictionbyintegratingcoxproportionalhazardsnetworkanddistributionfunctionnetwork |