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LoDoPaB-CT, a benchmark dataset for low-dose computed tomography reconstruction

Deep learning approaches for tomographic image reconstruction have become very effective and have been demonstrated to be competitive in the field. Comparing these approaches is a challenging task as they rely to a great extent on the data and setup used for training. With the Low-Dose Parallel Beam...

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Autores principales: Leuschner, Johannes, Schmidt, Maximilian, Baguer, Daniel Otero, Maass, Peter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8052416/
https://www.ncbi.nlm.nih.gov/pubmed/33863917
http://dx.doi.org/10.1038/s41597-021-00893-z
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author Leuschner, Johannes
Schmidt, Maximilian
Baguer, Daniel Otero
Maass, Peter
author_facet Leuschner, Johannes
Schmidt, Maximilian
Baguer, Daniel Otero
Maass, Peter
author_sort Leuschner, Johannes
collection PubMed
description Deep learning approaches for tomographic image reconstruction have become very effective and have been demonstrated to be competitive in the field. Comparing these approaches is a challenging task as they rely to a great extent on the data and setup used for training. With the Low-Dose Parallel Beam (LoDoPaB)-CT dataset, we provide a comprehensive, open-access database of computed tomography images and simulated low photon count measurements. It is suitable for training and comparing deep learning methods as well as classical reconstruction approaches. The dataset contains over 40000 scan slices from around 800 patients selected from the LIDC/IDRI database. The data selection and simulation setup are described in detail, and the generating script is publicly accessible. In addition, we provide a Python library for simplified access to the dataset and an online reconstruction challenge. Furthermore, the dataset can also be used for transfer learning as well as sparse and limited-angle reconstruction scenarios.
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spelling pubmed-80524162021-05-05 LoDoPaB-CT, a benchmark dataset for low-dose computed tomography reconstruction Leuschner, Johannes Schmidt, Maximilian Baguer, Daniel Otero Maass, Peter Sci Data Data Descriptor Deep learning approaches for tomographic image reconstruction have become very effective and have been demonstrated to be competitive in the field. Comparing these approaches is a challenging task as they rely to a great extent on the data and setup used for training. With the Low-Dose Parallel Beam (LoDoPaB)-CT dataset, we provide a comprehensive, open-access database of computed tomography images and simulated low photon count measurements. It is suitable for training and comparing deep learning methods as well as classical reconstruction approaches. The dataset contains over 40000 scan slices from around 800 patients selected from the LIDC/IDRI database. The data selection and simulation setup are described in detail, and the generating script is publicly accessible. In addition, we provide a Python library for simplified access to the dataset and an online reconstruction challenge. Furthermore, the dataset can also be used for transfer learning as well as sparse and limited-angle reconstruction scenarios. Nature Publishing Group UK 2021-04-16 /pmc/articles/PMC8052416/ /pubmed/33863917 http://dx.doi.org/10.1038/s41597-021-00893-z Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) applies to the metadata files associated with this article.
spellingShingle Data Descriptor
Leuschner, Johannes
Schmidt, Maximilian
Baguer, Daniel Otero
Maass, Peter
LoDoPaB-CT, a benchmark dataset for low-dose computed tomography reconstruction
title LoDoPaB-CT, a benchmark dataset for low-dose computed tomography reconstruction
title_full LoDoPaB-CT, a benchmark dataset for low-dose computed tomography reconstruction
title_fullStr LoDoPaB-CT, a benchmark dataset for low-dose computed tomography reconstruction
title_full_unstemmed LoDoPaB-CT, a benchmark dataset for low-dose computed tomography reconstruction
title_short LoDoPaB-CT, a benchmark dataset for low-dose computed tomography reconstruction
title_sort lodopab-ct, a benchmark dataset for low-dose computed tomography reconstruction
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8052416/
https://www.ncbi.nlm.nih.gov/pubmed/33863917
http://dx.doi.org/10.1038/s41597-021-00893-z
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