Cargando…
LoDoPaB-CT, a benchmark dataset for low-dose computed tomography reconstruction
Deep learning approaches for tomographic image reconstruction have become very effective and have been demonstrated to be competitive in the field. Comparing these approaches is a challenging task as they rely to a great extent on the data and setup used for training. With the Low-Dose Parallel Beam...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8052416/ https://www.ncbi.nlm.nih.gov/pubmed/33863917 http://dx.doi.org/10.1038/s41597-021-00893-z |
_version_ | 1783679913709010944 |
---|---|
author | Leuschner, Johannes Schmidt, Maximilian Baguer, Daniel Otero Maass, Peter |
author_facet | Leuschner, Johannes Schmidt, Maximilian Baguer, Daniel Otero Maass, Peter |
author_sort | Leuschner, Johannes |
collection | PubMed |
description | Deep learning approaches for tomographic image reconstruction have become very effective and have been demonstrated to be competitive in the field. Comparing these approaches is a challenging task as they rely to a great extent on the data and setup used for training. With the Low-Dose Parallel Beam (LoDoPaB)-CT dataset, we provide a comprehensive, open-access database of computed tomography images and simulated low photon count measurements. It is suitable for training and comparing deep learning methods as well as classical reconstruction approaches. The dataset contains over 40000 scan slices from around 800 patients selected from the LIDC/IDRI database. The data selection and simulation setup are described in detail, and the generating script is publicly accessible. In addition, we provide a Python library for simplified access to the dataset and an online reconstruction challenge. Furthermore, the dataset can also be used for transfer learning as well as sparse and limited-angle reconstruction scenarios. |
format | Online Article Text |
id | pubmed-8052416 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-80524162021-05-05 LoDoPaB-CT, a benchmark dataset for low-dose computed tomography reconstruction Leuschner, Johannes Schmidt, Maximilian Baguer, Daniel Otero Maass, Peter Sci Data Data Descriptor Deep learning approaches for tomographic image reconstruction have become very effective and have been demonstrated to be competitive in the field. Comparing these approaches is a challenging task as they rely to a great extent on the data and setup used for training. With the Low-Dose Parallel Beam (LoDoPaB)-CT dataset, we provide a comprehensive, open-access database of computed tomography images and simulated low photon count measurements. It is suitable for training and comparing deep learning methods as well as classical reconstruction approaches. The dataset contains over 40000 scan slices from around 800 patients selected from the LIDC/IDRI database. The data selection and simulation setup are described in detail, and the generating script is publicly accessible. In addition, we provide a Python library for simplified access to the dataset and an online reconstruction challenge. Furthermore, the dataset can also be used for transfer learning as well as sparse and limited-angle reconstruction scenarios. Nature Publishing Group UK 2021-04-16 /pmc/articles/PMC8052416/ /pubmed/33863917 http://dx.doi.org/10.1038/s41597-021-00893-z Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) applies to the metadata files associated with this article. |
spellingShingle | Data Descriptor Leuschner, Johannes Schmidt, Maximilian Baguer, Daniel Otero Maass, Peter LoDoPaB-CT, a benchmark dataset for low-dose computed tomography reconstruction |
title | LoDoPaB-CT, a benchmark dataset for low-dose computed tomography reconstruction |
title_full | LoDoPaB-CT, a benchmark dataset for low-dose computed tomography reconstruction |
title_fullStr | LoDoPaB-CT, a benchmark dataset for low-dose computed tomography reconstruction |
title_full_unstemmed | LoDoPaB-CT, a benchmark dataset for low-dose computed tomography reconstruction |
title_short | LoDoPaB-CT, a benchmark dataset for low-dose computed tomography reconstruction |
title_sort | lodopab-ct, a benchmark dataset for low-dose computed tomography reconstruction |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8052416/ https://www.ncbi.nlm.nih.gov/pubmed/33863917 http://dx.doi.org/10.1038/s41597-021-00893-z |
work_keys_str_mv | AT leuschnerjohannes lodopabctabenchmarkdatasetforlowdosecomputedtomographyreconstruction AT schmidtmaximilian lodopabctabenchmarkdatasetforlowdosecomputedtomographyreconstruction AT baguerdanielotero lodopabctabenchmarkdatasetforlowdosecomputedtomographyreconstruction AT maasspeter lodopabctabenchmarkdatasetforlowdosecomputedtomographyreconstruction |