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Strategies to Improve Convolutional Neural Network Generalizability and Reference Standards for Glaucoma Detection From OCT Scans

PURPOSE: To develop and evaluate methods to improve the generalizability of convolutional neural networks (CNNs) trained to detect glaucoma from optical coherence tomography retinal nerve fiber layer probability maps, as well as optical coherence tomography circumpapillary disc (circle) b-scans, and...

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Autores principales: Thakoor, Kaveri A., Li, Xinhui, Tsamis, Emmanouil, Zemborain, Zane Z., De Moraes, Carlos Gustavo, Sajda, Paul, Hood, Donald C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Association for Research in Vision and Ophthalmology 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8054628/
https://www.ncbi.nlm.nih.gov/pubmed/34003990
http://dx.doi.org/10.1167/tvst.10.4.16
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author Thakoor, Kaveri A.
Li, Xinhui
Tsamis, Emmanouil
Zemborain, Zane Z.
De Moraes, Carlos Gustavo
Sajda, Paul
Hood, Donald C.
author_facet Thakoor, Kaveri A.
Li, Xinhui
Tsamis, Emmanouil
Zemborain, Zane Z.
De Moraes, Carlos Gustavo
Sajda, Paul
Hood, Donald C.
author_sort Thakoor, Kaveri A.
collection PubMed
description PURPOSE: To develop and evaluate methods to improve the generalizability of convolutional neural networks (CNNs) trained to detect glaucoma from optical coherence tomography retinal nerve fiber layer probability maps, as well as optical coherence tomography circumpapillary disc (circle) b-scans, and to explore impact of reference standard (RS) on CNN accuracy. METHODS: CNNs previously optimized for glaucoma detection from retinal nerve fiber layer probability maps, and newly developed CNNs adapted for glaucoma detection from optical coherence tomography b-scans, were evaluated on an unseen dataset (i.e., data collected at a different site). Multiple techniques were used to enhance CNN generalizability, including augmenting the training dataset, using multimodal input, and training with confidently rated images. Model performance was evaluated with different RS. RESULTS: Training with data augmentation and training on confident images enhanced the accuracy of the CNNs for glaucoma detection on a new dataset by 5% to 9%. CNN performance was optimal when a similar RS was used to establish labels both for the training and the testing sets. However, interestingly, the CNNs described here were robust to variation in the RS. CONCLUSIONS: CNN generalizability can be improved with data augmentation, multiple input image modalities, and training on images with confident ratings. CNNs trained and tested with the same RS achieved best accuracy, suggesting that choosing a thorough and consistent RS for training and testing improves generalization to new datasets. TRANSLATIONAL RELEVANCE: Strategies for enhancing CNN generalizability and for choosing optimal RS should be standard practice for CNNs before their deployment for glaucoma detection.
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spelling pubmed-80546282021-05-05 Strategies to Improve Convolutional Neural Network Generalizability and Reference Standards for Glaucoma Detection From OCT Scans Thakoor, Kaveri A. Li, Xinhui Tsamis, Emmanouil Zemborain, Zane Z. De Moraes, Carlos Gustavo Sajda, Paul Hood, Donald C. Transl Vis Sci Technol Article PURPOSE: To develop and evaluate methods to improve the generalizability of convolutional neural networks (CNNs) trained to detect glaucoma from optical coherence tomography retinal nerve fiber layer probability maps, as well as optical coherence tomography circumpapillary disc (circle) b-scans, and to explore impact of reference standard (RS) on CNN accuracy. METHODS: CNNs previously optimized for glaucoma detection from retinal nerve fiber layer probability maps, and newly developed CNNs adapted for glaucoma detection from optical coherence tomography b-scans, were evaluated on an unseen dataset (i.e., data collected at a different site). Multiple techniques were used to enhance CNN generalizability, including augmenting the training dataset, using multimodal input, and training with confidently rated images. Model performance was evaluated with different RS. RESULTS: Training with data augmentation and training on confident images enhanced the accuracy of the CNNs for glaucoma detection on a new dataset by 5% to 9%. CNN performance was optimal when a similar RS was used to establish labels both for the training and the testing sets. However, interestingly, the CNNs described here were robust to variation in the RS. CONCLUSIONS: CNN generalizability can be improved with data augmentation, multiple input image modalities, and training on images with confident ratings. CNNs trained and tested with the same RS achieved best accuracy, suggesting that choosing a thorough and consistent RS for training and testing improves generalization to new datasets. TRANSLATIONAL RELEVANCE: Strategies for enhancing CNN generalizability and for choosing optimal RS should be standard practice for CNNs before their deployment for glaucoma detection. The Association for Research in Vision and Ophthalmology 2021-04-15 /pmc/articles/PMC8054628/ /pubmed/34003990 http://dx.doi.org/10.1167/tvst.10.4.16 Text en Copyright 2021 The Authors https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License.
spellingShingle Article
Thakoor, Kaveri A.
Li, Xinhui
Tsamis, Emmanouil
Zemborain, Zane Z.
De Moraes, Carlos Gustavo
Sajda, Paul
Hood, Donald C.
Strategies to Improve Convolutional Neural Network Generalizability and Reference Standards for Glaucoma Detection From OCT Scans
title Strategies to Improve Convolutional Neural Network Generalizability and Reference Standards for Glaucoma Detection From OCT Scans
title_full Strategies to Improve Convolutional Neural Network Generalizability and Reference Standards for Glaucoma Detection From OCT Scans
title_fullStr Strategies to Improve Convolutional Neural Network Generalizability and Reference Standards for Glaucoma Detection From OCT Scans
title_full_unstemmed Strategies to Improve Convolutional Neural Network Generalizability and Reference Standards for Glaucoma Detection From OCT Scans
title_short Strategies to Improve Convolutional Neural Network Generalizability and Reference Standards for Glaucoma Detection From OCT Scans
title_sort strategies to improve convolutional neural network generalizability and reference standards for glaucoma detection from oct scans
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8054628/
https://www.ncbi.nlm.nih.gov/pubmed/34003990
http://dx.doi.org/10.1167/tvst.10.4.16
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