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Lung Infection Segmentation for COVID-19 Pneumonia Based on a Cascade Convolutional Network from CT Images

The COVID-19 pandemic is a global, national, and local public health concern which has caused a significant outbreak in all countries and regions for both males and females around the world. Automated detection of lung infections and their boundaries from medical images offers a great potential to a...

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Autores principales: Ranjbarzadeh, Ramin, Jafarzadeh Ghoushchi, Saeid, Bendechache, Malika, Amirabadi, Amir, Ab Rahman, Mohd Nizam, Baseri Saadi, Soroush, Aghamohammadi, Amirhossein, Kooshki Forooshani, Mersedeh
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8054863/
https://www.ncbi.nlm.nih.gov/pubmed/33954175
http://dx.doi.org/10.1155/2021/5544742
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author Ranjbarzadeh, Ramin
Jafarzadeh Ghoushchi, Saeid
Bendechache, Malika
Amirabadi, Amir
Ab Rahman, Mohd Nizam
Baseri Saadi, Soroush
Aghamohammadi, Amirhossein
Kooshki Forooshani, Mersedeh
author_facet Ranjbarzadeh, Ramin
Jafarzadeh Ghoushchi, Saeid
Bendechache, Malika
Amirabadi, Amir
Ab Rahman, Mohd Nizam
Baseri Saadi, Soroush
Aghamohammadi, Amirhossein
Kooshki Forooshani, Mersedeh
author_sort Ranjbarzadeh, Ramin
collection PubMed
description The COVID-19 pandemic is a global, national, and local public health concern which has caused a significant outbreak in all countries and regions for both males and females around the world. Automated detection of lung infections and their boundaries from medical images offers a great potential to augment the patient treatment healthcare strategies for tackling COVID-19 and its impacts. Detecting this disease from lung CT scan images is perhaps one of the fastest ways to diagnose patients. However, finding the presence of infected tissues and segment them from CT slices faces numerous challenges, including similar adjacent tissues, vague boundary, and erratic infections. To eliminate these obstacles, we propose a two-route convolutional neural network (CNN) by extracting global and local features for detecting and classifying COVID-19 infection from CT images. Each pixel from the image is classified into the normal and infected tissues. For improving the classification accuracy, we used two different strategies including fuzzy c-means clustering and local directional pattern (LDN) encoding methods to represent the input image differently. This allows us to find more complex pattern from the image. To overcome the overfitting problems due to small samples, an augmentation approach is utilized. The results demonstrated that the proposed framework achieved precision 96%, recall 97%, F score, average surface distance (ASD) of 2.8 ± 0.3 mm, and volume overlap error (VOE) of 5.6 ± 1.2%.
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spelling pubmed-80548632021-05-04 Lung Infection Segmentation for COVID-19 Pneumonia Based on a Cascade Convolutional Network from CT Images Ranjbarzadeh, Ramin Jafarzadeh Ghoushchi, Saeid Bendechache, Malika Amirabadi, Amir Ab Rahman, Mohd Nizam Baseri Saadi, Soroush Aghamohammadi, Amirhossein Kooshki Forooshani, Mersedeh Biomed Res Int Research Article The COVID-19 pandemic is a global, national, and local public health concern which has caused a significant outbreak in all countries and regions for both males and females around the world. Automated detection of lung infections and their boundaries from medical images offers a great potential to augment the patient treatment healthcare strategies for tackling COVID-19 and its impacts. Detecting this disease from lung CT scan images is perhaps one of the fastest ways to diagnose patients. However, finding the presence of infected tissues and segment them from CT slices faces numerous challenges, including similar adjacent tissues, vague boundary, and erratic infections. To eliminate these obstacles, we propose a two-route convolutional neural network (CNN) by extracting global and local features for detecting and classifying COVID-19 infection from CT images. Each pixel from the image is classified into the normal and infected tissues. For improving the classification accuracy, we used two different strategies including fuzzy c-means clustering and local directional pattern (LDN) encoding methods to represent the input image differently. This allows us to find more complex pattern from the image. To overcome the overfitting problems due to small samples, an augmentation approach is utilized. The results demonstrated that the proposed framework achieved precision 96%, recall 97%, F score, average surface distance (ASD) of 2.8 ± 0.3 mm, and volume overlap error (VOE) of 5.6 ± 1.2%. Hindawi 2021-04-15 /pmc/articles/PMC8054863/ /pubmed/33954175 http://dx.doi.org/10.1155/2021/5544742 Text en Copyright © 2021 Ramin Ranjbarzadeh et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Ranjbarzadeh, Ramin
Jafarzadeh Ghoushchi, Saeid
Bendechache, Malika
Amirabadi, Amir
Ab Rahman, Mohd Nizam
Baseri Saadi, Soroush
Aghamohammadi, Amirhossein
Kooshki Forooshani, Mersedeh
Lung Infection Segmentation for COVID-19 Pneumonia Based on a Cascade Convolutional Network from CT Images
title Lung Infection Segmentation for COVID-19 Pneumonia Based on a Cascade Convolutional Network from CT Images
title_full Lung Infection Segmentation for COVID-19 Pneumonia Based on a Cascade Convolutional Network from CT Images
title_fullStr Lung Infection Segmentation for COVID-19 Pneumonia Based on a Cascade Convolutional Network from CT Images
title_full_unstemmed Lung Infection Segmentation for COVID-19 Pneumonia Based on a Cascade Convolutional Network from CT Images
title_short Lung Infection Segmentation for COVID-19 Pneumonia Based on a Cascade Convolutional Network from CT Images
title_sort lung infection segmentation for covid-19 pneumonia based on a cascade convolutional network from ct images
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8054863/
https://www.ncbi.nlm.nih.gov/pubmed/33954175
http://dx.doi.org/10.1155/2021/5544742
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