Cargando…
Pseudidiomarina piscicola sp. nov., isolated from cultured European seabass, Dicenthrarchus labrax
Strain CECT 9734( T), a Gram-negative, aerobic, chemoorganotrophic bacterium, motile by polar flagella, was isolated from cultured European seabass, Dicenthrarchus labrax, in Spain. It grows from 5 to 42 ºC, 6–9 pH and 1–12% total salinity. Major cellular fatty acids are C(15:0) iso, summed feature...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8055624/ https://www.ncbi.nlm.nih.gov/pubmed/33284382 http://dx.doi.org/10.1007/s00203-020-02131-3 |
_version_ | 1783680488247918592 |
---|---|
author | Macián, M. Carmen Lucena, Teresa Arahal, David R. Ruvira, María A. Aznar, Rosa Pujalte, María J. |
author_facet | Macián, M. Carmen Lucena, Teresa Arahal, David R. Ruvira, María A. Aznar, Rosa Pujalte, María J. |
author_sort | Macián, M. Carmen |
collection | PubMed |
description | Strain CECT 9734( T), a Gram-negative, aerobic, chemoorganotrophic bacterium, motile by polar flagella, was isolated from cultured European seabass, Dicenthrarchus labrax, in Spain. It grows from 5 to 42 ºC, 6–9 pH and 1–12% total salinity. Major cellular fatty acids are C(15:0) iso, summed feature 9 (C(17:1) iso w9c/C(16:0) 10-methyl) and C(17:0) iso. The genome size is 2.5 Mbp and G + C content is 49.5 mol%. Comparative analysis of the 16S rRNA gene sequence shows that the strain is a member of Pseudidiomarina, with highest similarities with Pseudidiomarina halophila (97.0%) and Pseudidiomarina salinarum (96.9%). Phylogenomic tree based on UBCG program shows P. halophila as its closest relative. ANI and in-silico DDH with other Pseudidiomarina spp. are lower than 87 and 20%, respectively, suggesting that strain CECT 9734( T) represents a new species, for which we propose the name Pseudidiomarina piscicola sp. nov. and CECT 9734( T) (= LUBLD50 7a(T) = LMG 31044( T)) as type strain. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00203-020-02131-3. |
format | Online Article Text |
id | pubmed-8055624 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-80556242021-05-05 Pseudidiomarina piscicola sp. nov., isolated from cultured European seabass, Dicenthrarchus labrax Macián, M. Carmen Lucena, Teresa Arahal, David R. Ruvira, María A. Aznar, Rosa Pujalte, María J. Arch Microbiol Original Paper Strain CECT 9734( T), a Gram-negative, aerobic, chemoorganotrophic bacterium, motile by polar flagella, was isolated from cultured European seabass, Dicenthrarchus labrax, in Spain. It grows from 5 to 42 ºC, 6–9 pH and 1–12% total salinity. Major cellular fatty acids are C(15:0) iso, summed feature 9 (C(17:1) iso w9c/C(16:0) 10-methyl) and C(17:0) iso. The genome size is 2.5 Mbp and G + C content is 49.5 mol%. Comparative analysis of the 16S rRNA gene sequence shows that the strain is a member of Pseudidiomarina, with highest similarities with Pseudidiomarina halophila (97.0%) and Pseudidiomarina salinarum (96.9%). Phylogenomic tree based on UBCG program shows P. halophila as its closest relative. ANI and in-silico DDH with other Pseudidiomarina spp. are lower than 87 and 20%, respectively, suggesting that strain CECT 9734( T) represents a new species, for which we propose the name Pseudidiomarina piscicola sp. nov. and CECT 9734( T) (= LUBLD50 7a(T) = LMG 31044( T)) as type strain. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00203-020-02131-3. Springer Berlin Heidelberg 2020-12-07 2021 /pmc/articles/PMC8055624/ /pubmed/33284382 http://dx.doi.org/10.1007/s00203-020-02131-3 Text en © The Author(s) 2020 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Paper Macián, M. Carmen Lucena, Teresa Arahal, David R. Ruvira, María A. Aznar, Rosa Pujalte, María J. Pseudidiomarina piscicola sp. nov., isolated from cultured European seabass, Dicenthrarchus labrax |
title | Pseudidiomarina piscicola sp. nov., isolated from cultured European seabass, Dicenthrarchus labrax |
title_full | Pseudidiomarina piscicola sp. nov., isolated from cultured European seabass, Dicenthrarchus labrax |
title_fullStr | Pseudidiomarina piscicola sp. nov., isolated from cultured European seabass, Dicenthrarchus labrax |
title_full_unstemmed | Pseudidiomarina piscicola sp. nov., isolated from cultured European seabass, Dicenthrarchus labrax |
title_short | Pseudidiomarina piscicola sp. nov., isolated from cultured European seabass, Dicenthrarchus labrax |
title_sort | pseudidiomarina piscicola sp. nov., isolated from cultured european seabass, dicenthrarchus labrax |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8055624/ https://www.ncbi.nlm.nih.gov/pubmed/33284382 http://dx.doi.org/10.1007/s00203-020-02131-3 |
work_keys_str_mv | AT macianmcarmen pseudidiomarinapiscicolaspnovisolatedfromculturedeuropeanseabassdicenthrarchuslabrax AT lucenateresa pseudidiomarinapiscicolaspnovisolatedfromculturedeuropeanseabassdicenthrarchuslabrax AT arahaldavidr pseudidiomarinapiscicolaspnovisolatedfromculturedeuropeanseabassdicenthrarchuslabrax AT ruviramariaa pseudidiomarinapiscicolaspnovisolatedfromculturedeuropeanseabassdicenthrarchuslabrax AT aznarrosa pseudidiomarinapiscicolaspnovisolatedfromculturedeuropeanseabassdicenthrarchuslabrax AT pujaltemariaj pseudidiomarinapiscicolaspnovisolatedfromculturedeuropeanseabassdicenthrarchuslabrax |