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Influence of Non-canonical DNA Bases on the Genomic Diversity of Tevenvirinae

The Tevenvirinae viruses are some of the most common viruses on Earth. Representatives of this subfamily have long been used in the molecular biology studies as model organisms – since the emergence of the discipline. Tevenvirinae are promising agents for phage therapy in animals and humans, since t...

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Autores principales: Nikulin, Nikita A., Zimin, Andrei A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8056088/
https://www.ncbi.nlm.nih.gov/pubmed/33889139
http://dx.doi.org/10.3389/fmicb.2021.632686
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author Nikulin, Nikita A.
Zimin, Andrei A.
author_facet Nikulin, Nikita A.
Zimin, Andrei A.
author_sort Nikulin, Nikita A.
collection PubMed
description The Tevenvirinae viruses are some of the most common viruses on Earth. Representatives of this subfamily have long been used in the molecular biology studies as model organisms – since the emergence of the discipline. Tevenvirinae are promising agents for phage therapy in animals and humans, since their representatives have only lytic life cycle and many of their host bacteria are pathogens. As confirmed experimentally, some Tevenvirinae have non-canonical DNA bases. Non-canonical bases can play an essential role in the diversification of closely related viruses. The article performs a comparative and evolutionary analysis of Tevenvirinae genomes and components of Tevenvirinae genomes. A comparative analysis of these genomes and the genes associated with the synthesis of non-canonical bases allows us to conclude that non-canonical bases have a major influence on the divergence of Tevenvirinae viruses within the same habitats. Supposedly, Tevenvirinae developed a strategy for changing HGT frequency in individual populations, which was based on the accumulation of proteins for the synthesis of non-canonical bases and proteins that used those bases as substrates. Owing to this strategy, ancestors of Tevenvirinae with the highest frequency of HGT acquired genes that allowed them to exist in a certain niche, and ancestors with the lowest HGT frequency preserved the most adaptive of those genes. Given the origin and characteristics of genes associated with the synthesis of non-canonical bases in Tevenvirinae, one can assume that other phages may have similar strategies. The article demonstrates the dependence of genomic diversity of closely related Tevenvirinae on non-canonical bases.
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spelling pubmed-80560882021-04-21 Influence of Non-canonical DNA Bases on the Genomic Diversity of Tevenvirinae Nikulin, Nikita A. Zimin, Andrei A. Front Microbiol Microbiology The Tevenvirinae viruses are some of the most common viruses on Earth. Representatives of this subfamily have long been used in the molecular biology studies as model organisms – since the emergence of the discipline. Tevenvirinae are promising agents for phage therapy in animals and humans, since their representatives have only lytic life cycle and many of their host bacteria are pathogens. As confirmed experimentally, some Tevenvirinae have non-canonical DNA bases. Non-canonical bases can play an essential role in the diversification of closely related viruses. The article performs a comparative and evolutionary analysis of Tevenvirinae genomes and components of Tevenvirinae genomes. A comparative analysis of these genomes and the genes associated with the synthesis of non-canonical bases allows us to conclude that non-canonical bases have a major influence on the divergence of Tevenvirinae viruses within the same habitats. Supposedly, Tevenvirinae developed a strategy for changing HGT frequency in individual populations, which was based on the accumulation of proteins for the synthesis of non-canonical bases and proteins that used those bases as substrates. Owing to this strategy, ancestors of Tevenvirinae with the highest frequency of HGT acquired genes that allowed them to exist in a certain niche, and ancestors with the lowest HGT frequency preserved the most adaptive of those genes. Given the origin and characteristics of genes associated with the synthesis of non-canonical bases in Tevenvirinae, one can assume that other phages may have similar strategies. The article demonstrates the dependence of genomic diversity of closely related Tevenvirinae on non-canonical bases. Frontiers Media S.A. 2021-04-06 /pmc/articles/PMC8056088/ /pubmed/33889139 http://dx.doi.org/10.3389/fmicb.2021.632686 Text en Copyright © 2021 Nikulin and Zimin. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Nikulin, Nikita A.
Zimin, Andrei A.
Influence of Non-canonical DNA Bases on the Genomic Diversity of Tevenvirinae
title Influence of Non-canonical DNA Bases on the Genomic Diversity of Tevenvirinae
title_full Influence of Non-canonical DNA Bases on the Genomic Diversity of Tevenvirinae
title_fullStr Influence of Non-canonical DNA Bases on the Genomic Diversity of Tevenvirinae
title_full_unstemmed Influence of Non-canonical DNA Bases on the Genomic Diversity of Tevenvirinae
title_short Influence of Non-canonical DNA Bases on the Genomic Diversity of Tevenvirinae
title_sort influence of non-canonical dna bases on the genomic diversity of tevenvirinae
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8056088/
https://www.ncbi.nlm.nih.gov/pubmed/33889139
http://dx.doi.org/10.3389/fmicb.2021.632686
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