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Insertion of a Loop Structure into the “Loopless” GH19 Chitinase from Bryum coronatum

Chitinases belonging to the GH19 family have diverse loop structure arrangements. A GH19 chitinase from rye seeds (RSC-c) has a full set of (six) loop structures that form an extended binding cleft from -4 to +4 (“loopful”), while that from moss (BcChi-A) lacks several loops and forms a shortened bi...

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Autores principales: Takenaka, Shoko, Ohnuma, Takayuki, Fukamizo, Tamo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Japanese Society of Applied Glycoscience 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8056905/
https://www.ncbi.nlm.nih.gov/pubmed/34354495
http://dx.doi.org/10.5458/jag.jag.JAG-2016_015
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author Takenaka, Shoko
Ohnuma, Takayuki
Fukamizo, Tamo
author_facet Takenaka, Shoko
Ohnuma, Takayuki
Fukamizo, Tamo
author_sort Takenaka, Shoko
collection PubMed
description Chitinases belonging to the GH19 family have diverse loop structure arrangements. A GH19 chitinase from rye seeds (RSC-c) has a full set of (six) loop structures that form an extended binding cleft from -4 to +4 (“loopful”), while that from moss (BcChi-A) lacks several loops and forms a shortened binding cleft from -2 to +2 (“loopless”). We herein inserted a loop involved in sugar residue binding at subsites +3 and +4 of RSC-c (Loop-II) into BcChi-A (BcChi-A+L-II), and the thermal stability and enzymatic activity of BcChi-A+L-II were then characterized and compared with those of BcChi-A. The transition temperature of thermal unfolding decreased from 77.2 ˚C (BcChi-A) to 63.3 ˚C (BcChi-A+L-II) by insertion of Loop-II. Enzymatic activities toward the chitin tetramer (GlcNAc)(4) and the polymeric substrate glycol chitin were also suppressed by the Loop-II insertion to 12 and 9 %, respectively. The Loop-II inserted into BcChi-A was found to be markedly flexible and disadvantageous for protein stability and enzymatic activity.
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spelling pubmed-80569052021-08-04 Insertion of a Loop Structure into the “Loopless” GH19 Chitinase from Bryum coronatum Takenaka, Shoko Ohnuma, Takayuki Fukamizo, Tamo J Appl Glycosci (1999) Note Chitinases belonging to the GH19 family have diverse loop structure arrangements. A GH19 chitinase from rye seeds (RSC-c) has a full set of (six) loop structures that form an extended binding cleft from -4 to +4 (“loopful”), while that from moss (BcChi-A) lacks several loops and forms a shortened binding cleft from -2 to +2 (“loopless”). We herein inserted a loop involved in sugar residue binding at subsites +3 and +4 of RSC-c (Loop-II) into BcChi-A (BcChi-A+L-II), and the thermal stability and enzymatic activity of BcChi-A+L-II were then characterized and compared with those of BcChi-A. The transition temperature of thermal unfolding decreased from 77.2 ˚C (BcChi-A) to 63.3 ˚C (BcChi-A+L-II) by insertion of Loop-II. Enzymatic activities toward the chitin tetramer (GlcNAc)(4) and the polymeric substrate glycol chitin were also suppressed by the Loop-II insertion to 12 and 9 %, respectively. The Loop-II inserted into BcChi-A was found to be markedly flexible and disadvantageous for protein stability and enzymatic activity. The Japanese Society of Applied Glycoscience 2017-05-20 /pmc/articles/PMC8056905/ /pubmed/34354495 http://dx.doi.org/10.5458/jag.jag.JAG-2016_015 Text en 2017 by The Japanese Society of Applied Glycoscience https://creativecommons.org/licenses/by-nc/4.0/This is an open-access paper distributed under the terms of the Creative Commons Attribution Non-Commercial (by-nc) License (CC-BY-NC4.0: https://creativecommons.org/licenses/by-nc/4.0/).
spellingShingle Note
Takenaka, Shoko
Ohnuma, Takayuki
Fukamizo, Tamo
Insertion of a Loop Structure into the “Loopless” GH19 Chitinase from Bryum coronatum
title Insertion of a Loop Structure into the “Loopless” GH19 Chitinase from Bryum coronatum
title_full Insertion of a Loop Structure into the “Loopless” GH19 Chitinase from Bryum coronatum
title_fullStr Insertion of a Loop Structure into the “Loopless” GH19 Chitinase from Bryum coronatum
title_full_unstemmed Insertion of a Loop Structure into the “Loopless” GH19 Chitinase from Bryum coronatum
title_short Insertion of a Loop Structure into the “Loopless” GH19 Chitinase from Bryum coronatum
title_sort insertion of a loop structure into the “loopless” gh19 chitinase from bryum coronatum
topic Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8056905/
https://www.ncbi.nlm.nih.gov/pubmed/34354495
http://dx.doi.org/10.5458/jag.jag.JAG-2016_015
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