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Optimal hyperparameter selection of deep learning models for COVID-19 chest X-ray classification

The first and most critical response to curbing the spread of the novel coronavirus disease (COVID-19) is to deploy effective techniques to test potentially infected patients, isolate them and commence immediate treatment. However, several test kits currently in use are slow and in a shortage of sup...

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Autores principales: Adedigba, Adeyinka P., Adeshina, Steve A., Aina, Oluwatomisin E., Aibinu, Abiodun M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Author(s). Published by Elsevier B.V. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8057926/
https://www.ncbi.nlm.nih.gov/pubmed/33899036
http://dx.doi.org/10.1016/j.ibmed.2021.100034
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author Adedigba, Adeyinka P.
Adeshina, Steve A.
Aina, Oluwatomisin E.
Aibinu, Abiodun M.
author_facet Adedigba, Adeyinka P.
Adeshina, Steve A.
Aina, Oluwatomisin E.
Aibinu, Abiodun M.
author_sort Adedigba, Adeyinka P.
collection PubMed
description The first and most critical response to curbing the spread of the novel coronavirus disease (COVID-19) is to deploy effective techniques to test potentially infected patients, isolate them and commence immediate treatment. However, several test kits currently in use are slow and in a shortage of supply. This paper presents techniques for diagnosing COVID-19 from chest X-ray (CXR) and address problems associated with training deep models with less voluminous datasets and class imbalance as obtained in most available CXR datasets on COVID-19. We used the discriminative fine-tuning approach, which dynamically assigns different learning rates to each layer of the network. The learning rate is set using the cyclical learning rate policy that changes per iteration. This flexibility ensured rapid convergence and avoided being stuck in saddle point plateau. In addition, we addressed the high computational demand of deep models by implementing our algorithm using the memory- and computational-efficient mixed-precision training. Despite the availability of scanty datasets, our model achieved high performance and generalisation. A Validation accuracy of 96.83%, sensitivity and specificity of 96.26% and 95.54% were obtained, respectively. When tested on an entirely new dataset, the model achieves 97% accuracy without further training. Lastly, we presented a visual interpretation of the model’s output to prove that the model can aid radiologists in rapidly screening for the symptoms of COVID-19.
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spelling pubmed-80579262021-04-21 Optimal hyperparameter selection of deep learning models for COVID-19 chest X-ray classification Adedigba, Adeyinka P. Adeshina, Steve A. Aina, Oluwatomisin E. Aibinu, Abiodun M. Intell Based Med Article The first and most critical response to curbing the spread of the novel coronavirus disease (COVID-19) is to deploy effective techniques to test potentially infected patients, isolate them and commence immediate treatment. However, several test kits currently in use are slow and in a shortage of supply. This paper presents techniques for diagnosing COVID-19 from chest X-ray (CXR) and address problems associated with training deep models with less voluminous datasets and class imbalance as obtained in most available CXR datasets on COVID-19. We used the discriminative fine-tuning approach, which dynamically assigns different learning rates to each layer of the network. The learning rate is set using the cyclical learning rate policy that changes per iteration. This flexibility ensured rapid convergence and avoided being stuck in saddle point plateau. In addition, we addressed the high computational demand of deep models by implementing our algorithm using the memory- and computational-efficient mixed-precision training. Despite the availability of scanty datasets, our model achieved high performance and generalisation. A Validation accuracy of 96.83%, sensitivity and specificity of 96.26% and 95.54% were obtained, respectively. When tested on an entirely new dataset, the model achieves 97% accuracy without further training. Lastly, we presented a visual interpretation of the model’s output to prove that the model can aid radiologists in rapidly screening for the symptoms of COVID-19. The Author(s). Published by Elsevier B.V. 2021 2021-04-21 /pmc/articles/PMC8057926/ /pubmed/33899036 http://dx.doi.org/10.1016/j.ibmed.2021.100034 Text en © 2021 The Author(s) Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Adedigba, Adeyinka P.
Adeshina, Steve A.
Aina, Oluwatomisin E.
Aibinu, Abiodun M.
Optimal hyperparameter selection of deep learning models for COVID-19 chest X-ray classification
title Optimal hyperparameter selection of deep learning models for COVID-19 chest X-ray classification
title_full Optimal hyperparameter selection of deep learning models for COVID-19 chest X-ray classification
title_fullStr Optimal hyperparameter selection of deep learning models for COVID-19 chest X-ray classification
title_full_unstemmed Optimal hyperparameter selection of deep learning models for COVID-19 chest X-ray classification
title_short Optimal hyperparameter selection of deep learning models for COVID-19 chest X-ray classification
title_sort optimal hyperparameter selection of deep learning models for covid-19 chest x-ray classification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8057926/
https://www.ncbi.nlm.nih.gov/pubmed/33899036
http://dx.doi.org/10.1016/j.ibmed.2021.100034
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