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The importance of uncertainty quantification in model reproducibility
Many computer models possess high-dimensional input spaces and substantial computational time to produce a single model evaluation. Although such models are often ‘deterministic’, these models suffer from a wide range of uncertainties. We argue that uncertainty quantification is crucial for computer...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society Publishing
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8059558/ https://www.ncbi.nlm.nih.gov/pubmed/33775141 http://dx.doi.org/10.1098/rsta.2020.0071 |
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author | Volodina, Victoria Challenor, Peter |
author_facet | Volodina, Victoria Challenor, Peter |
author_sort | Volodina, Victoria |
collection | PubMed |
description | Many computer models possess high-dimensional input spaces and substantial computational time to produce a single model evaluation. Although such models are often ‘deterministic’, these models suffer from a wide range of uncertainties. We argue that uncertainty quantification is crucial for computer model validation and reproducibility. We present a statistical framework, termed history matching, for performing global parameter search by comparing model output to the observed data. We employ Gaussian process (GP) emulators to produce fast predictions about model behaviour at the arbitrary input parameter settings allowing output uncertainty distributions to be calculated. History matching identifies sets of input parameters that give rise to acceptable matches between observed data and model output given our representation of uncertainties. Modellers could proceed by simulating computer models’ outputs of interest at these identified parameter settings and producing a range of predictions. The variability in model results is crucial for inter-model comparison as well as model development. We illustrate the performance of emulation and history matching on a simple one-dimensional toy model and in application to a climate model. This article is part of the theme issue ‘Reliability and reproducibility in computational science: implementing verification, validation and uncertainty quantification in silico’. |
format | Online Article Text |
id | pubmed-8059558 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | The Royal Society Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-80595582022-02-02 The importance of uncertainty quantification in model reproducibility Volodina, Victoria Challenor, Peter Philos Trans A Math Phys Eng Sci Articles Many computer models possess high-dimensional input spaces and substantial computational time to produce a single model evaluation. Although such models are often ‘deterministic’, these models suffer from a wide range of uncertainties. We argue that uncertainty quantification is crucial for computer model validation and reproducibility. We present a statistical framework, termed history matching, for performing global parameter search by comparing model output to the observed data. We employ Gaussian process (GP) emulators to produce fast predictions about model behaviour at the arbitrary input parameter settings allowing output uncertainty distributions to be calculated. History matching identifies sets of input parameters that give rise to acceptable matches between observed data and model output given our representation of uncertainties. Modellers could proceed by simulating computer models’ outputs of interest at these identified parameter settings and producing a range of predictions. The variability in model results is crucial for inter-model comparison as well as model development. We illustrate the performance of emulation and history matching on a simple one-dimensional toy model and in application to a climate model. This article is part of the theme issue ‘Reliability and reproducibility in computational science: implementing verification, validation and uncertainty quantification in silico’. The Royal Society Publishing 2021-05-17 2021-03-29 /pmc/articles/PMC8059558/ /pubmed/33775141 http://dx.doi.org/10.1098/rsta.2020.0071 Text en © 2021 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Articles Volodina, Victoria Challenor, Peter The importance of uncertainty quantification in model reproducibility |
title | The importance of uncertainty quantification in model reproducibility |
title_full | The importance of uncertainty quantification in model reproducibility |
title_fullStr | The importance of uncertainty quantification in model reproducibility |
title_full_unstemmed | The importance of uncertainty quantification in model reproducibility |
title_short | The importance of uncertainty quantification in model reproducibility |
title_sort | importance of uncertainty quantification in model reproducibility |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8059558/ https://www.ncbi.nlm.nih.gov/pubmed/33775141 http://dx.doi.org/10.1098/rsta.2020.0071 |
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