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Sparse Poisson regression via mixed-integer optimization

We present a mixed-integer optimization (MIO) approach to sparse Poisson regression. The MIO approach to sparse linear regression was first proposed in the 1970s, but has recently received renewed attention due to advances in optimization algorithms and computer hardware. In contrast to many sparse...

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Detalles Bibliográficos
Autores principales: Saishu, Hiroki, Kudo, Kota, Takano, Yuichi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8062005/
https://www.ncbi.nlm.nih.gov/pubmed/33886612
http://dx.doi.org/10.1371/journal.pone.0249916
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author Saishu, Hiroki
Kudo, Kota
Takano, Yuichi
author_facet Saishu, Hiroki
Kudo, Kota
Takano, Yuichi
author_sort Saishu, Hiroki
collection PubMed
description We present a mixed-integer optimization (MIO) approach to sparse Poisson regression. The MIO approach to sparse linear regression was first proposed in the 1970s, but has recently received renewed attention due to advances in optimization algorithms and computer hardware. In contrast to many sparse estimation algorithms, the MIO approach has the advantage of finding the best subset of explanatory variables with respect to various criterion functions. In this paper, we focus on a sparse Poisson regression that maximizes the weighted sum of the log-likelihood function and the L(2)-regularization term. For this problem, we derive a mixed-integer quadratic optimization (MIQO) formulation by applying a piecewise-linear approximation to the log-likelihood function. Optimization software can solve this MIQO problem to optimality. Moreover, we propose two methods for selecting a limited number of tangent lines effective for piecewise-linear approximations. We assess the efficacy of our method through computational experiments using synthetic and real-world datasets. Our methods provide better log-likelihood values than do conventional greedy algorithms in selecting tangent lines. In addition, our MIQO formulation delivers better out-of-sample prediction performance than do forward stepwise selection and L(1)-regularized estimation, especially in low-noise situations.
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spelling pubmed-80620052021-05-04 Sparse Poisson regression via mixed-integer optimization Saishu, Hiroki Kudo, Kota Takano, Yuichi PLoS One Research Article We present a mixed-integer optimization (MIO) approach to sparse Poisson regression. The MIO approach to sparse linear regression was first proposed in the 1970s, but has recently received renewed attention due to advances in optimization algorithms and computer hardware. In contrast to many sparse estimation algorithms, the MIO approach has the advantage of finding the best subset of explanatory variables with respect to various criterion functions. In this paper, we focus on a sparse Poisson regression that maximizes the weighted sum of the log-likelihood function and the L(2)-regularization term. For this problem, we derive a mixed-integer quadratic optimization (MIQO) formulation by applying a piecewise-linear approximation to the log-likelihood function. Optimization software can solve this MIQO problem to optimality. Moreover, we propose two methods for selecting a limited number of tangent lines effective for piecewise-linear approximations. We assess the efficacy of our method through computational experiments using synthetic and real-world datasets. Our methods provide better log-likelihood values than do conventional greedy algorithms in selecting tangent lines. In addition, our MIQO formulation delivers better out-of-sample prediction performance than do forward stepwise selection and L(1)-regularized estimation, especially in low-noise situations. Public Library of Science 2021-04-22 /pmc/articles/PMC8062005/ /pubmed/33886612 http://dx.doi.org/10.1371/journal.pone.0249916 Text en © 2021 Saishu et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Saishu, Hiroki
Kudo, Kota
Takano, Yuichi
Sparse Poisson regression via mixed-integer optimization
title Sparse Poisson regression via mixed-integer optimization
title_full Sparse Poisson regression via mixed-integer optimization
title_fullStr Sparse Poisson regression via mixed-integer optimization
title_full_unstemmed Sparse Poisson regression via mixed-integer optimization
title_short Sparse Poisson regression via mixed-integer optimization
title_sort sparse poisson regression via mixed-integer optimization
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8062005/
https://www.ncbi.nlm.nih.gov/pubmed/33886612
http://dx.doi.org/10.1371/journal.pone.0249916
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