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Sparse Poisson regression via mixed-integer optimization
We present a mixed-integer optimization (MIO) approach to sparse Poisson regression. The MIO approach to sparse linear regression was first proposed in the 1970s, but has recently received renewed attention due to advances in optimization algorithms and computer hardware. In contrast to many sparse...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8062005/ https://www.ncbi.nlm.nih.gov/pubmed/33886612 http://dx.doi.org/10.1371/journal.pone.0249916 |
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author | Saishu, Hiroki Kudo, Kota Takano, Yuichi |
author_facet | Saishu, Hiroki Kudo, Kota Takano, Yuichi |
author_sort | Saishu, Hiroki |
collection | PubMed |
description | We present a mixed-integer optimization (MIO) approach to sparse Poisson regression. The MIO approach to sparse linear regression was first proposed in the 1970s, but has recently received renewed attention due to advances in optimization algorithms and computer hardware. In contrast to many sparse estimation algorithms, the MIO approach has the advantage of finding the best subset of explanatory variables with respect to various criterion functions. In this paper, we focus on a sparse Poisson regression that maximizes the weighted sum of the log-likelihood function and the L(2)-regularization term. For this problem, we derive a mixed-integer quadratic optimization (MIQO) formulation by applying a piecewise-linear approximation to the log-likelihood function. Optimization software can solve this MIQO problem to optimality. Moreover, we propose two methods for selecting a limited number of tangent lines effective for piecewise-linear approximations. We assess the efficacy of our method through computational experiments using synthetic and real-world datasets. Our methods provide better log-likelihood values than do conventional greedy algorithms in selecting tangent lines. In addition, our MIQO formulation delivers better out-of-sample prediction performance than do forward stepwise selection and L(1)-regularized estimation, especially in low-noise situations. |
format | Online Article Text |
id | pubmed-8062005 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-80620052021-05-04 Sparse Poisson regression via mixed-integer optimization Saishu, Hiroki Kudo, Kota Takano, Yuichi PLoS One Research Article We present a mixed-integer optimization (MIO) approach to sparse Poisson regression. The MIO approach to sparse linear regression was first proposed in the 1970s, but has recently received renewed attention due to advances in optimization algorithms and computer hardware. In contrast to many sparse estimation algorithms, the MIO approach has the advantage of finding the best subset of explanatory variables with respect to various criterion functions. In this paper, we focus on a sparse Poisson regression that maximizes the weighted sum of the log-likelihood function and the L(2)-regularization term. For this problem, we derive a mixed-integer quadratic optimization (MIQO) formulation by applying a piecewise-linear approximation to the log-likelihood function. Optimization software can solve this MIQO problem to optimality. Moreover, we propose two methods for selecting a limited number of tangent lines effective for piecewise-linear approximations. We assess the efficacy of our method through computational experiments using synthetic and real-world datasets. Our methods provide better log-likelihood values than do conventional greedy algorithms in selecting tangent lines. In addition, our MIQO formulation delivers better out-of-sample prediction performance than do forward stepwise selection and L(1)-regularized estimation, especially in low-noise situations. Public Library of Science 2021-04-22 /pmc/articles/PMC8062005/ /pubmed/33886612 http://dx.doi.org/10.1371/journal.pone.0249916 Text en © 2021 Saishu et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Saishu, Hiroki Kudo, Kota Takano, Yuichi Sparse Poisson regression via mixed-integer optimization |
title | Sparse Poisson regression via mixed-integer optimization |
title_full | Sparse Poisson regression via mixed-integer optimization |
title_fullStr | Sparse Poisson regression via mixed-integer optimization |
title_full_unstemmed | Sparse Poisson regression via mixed-integer optimization |
title_short | Sparse Poisson regression via mixed-integer optimization |
title_sort | sparse poisson regression via mixed-integer optimization |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8062005/ https://www.ncbi.nlm.nih.gov/pubmed/33886612 http://dx.doi.org/10.1371/journal.pone.0249916 |
work_keys_str_mv | AT saishuhiroki sparsepoissonregressionviamixedintegeroptimization AT kudokota sparsepoissonregressionviamixedintegeroptimization AT takanoyuichi sparsepoissonregressionviamixedintegeroptimization |