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Crowdsourcing airway annotations in chest computed tomography images

Measuring airways in chest computed tomography (CT) scans is important for characterizing diseases such as cystic fibrosis, yet very time-consuming to perform manually. Machine learning algorithms offer an alternative, but need large sets of annotated scans for good performance. We investigate wheth...

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Detalles Bibliográficos
Autores principales: Cheplygina, Veronika, Perez-Rovira, Adria, Kuo, Wieying, Tiddens, Harm A. W. M., de Bruijne, Marleen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8062042/
https://www.ncbi.nlm.nih.gov/pubmed/33886587
http://dx.doi.org/10.1371/journal.pone.0249580
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author Cheplygina, Veronika
Perez-Rovira, Adria
Kuo, Wieying
Tiddens, Harm A. W. M.
de Bruijne, Marleen
author_facet Cheplygina, Veronika
Perez-Rovira, Adria
Kuo, Wieying
Tiddens, Harm A. W. M.
de Bruijne, Marleen
author_sort Cheplygina, Veronika
collection PubMed
description Measuring airways in chest computed tomography (CT) scans is important for characterizing diseases such as cystic fibrosis, yet very time-consuming to perform manually. Machine learning algorithms offer an alternative, but need large sets of annotated scans for good performance. We investigate whether crowdsourcing can be used to gather airway annotations. We generate image slices at known locations of airways in 24 subjects and request the crowd workers to outline the airway lumen and airway wall. After combining multiple crowd workers, we compare the measurements to those made by the experts in the original scans. Similar to our preliminary study, a large portion of the annotations were excluded, possibly due to workers misunderstanding the instructions. After excluding such annotations, moderate to strong correlations with the expert can be observed, although these correlations are slightly lower than inter-expert correlations. Furthermore, the results across subjects in this study are quite variable. Although the crowd has potential in annotating airways, further development is needed for it to be robust enough for gathering annotations in practice. For reproducibility, data and code are available online: http://github.com/adriapr/crowdairway.git.
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spelling pubmed-80620422021-05-04 Crowdsourcing airway annotations in chest computed tomography images Cheplygina, Veronika Perez-Rovira, Adria Kuo, Wieying Tiddens, Harm A. W. M. de Bruijne, Marleen PLoS One Research Article Measuring airways in chest computed tomography (CT) scans is important for characterizing diseases such as cystic fibrosis, yet very time-consuming to perform manually. Machine learning algorithms offer an alternative, but need large sets of annotated scans for good performance. We investigate whether crowdsourcing can be used to gather airway annotations. We generate image slices at known locations of airways in 24 subjects and request the crowd workers to outline the airway lumen and airway wall. After combining multiple crowd workers, we compare the measurements to those made by the experts in the original scans. Similar to our preliminary study, a large portion of the annotations were excluded, possibly due to workers misunderstanding the instructions. After excluding such annotations, moderate to strong correlations with the expert can be observed, although these correlations are slightly lower than inter-expert correlations. Furthermore, the results across subjects in this study are quite variable. Although the crowd has potential in annotating airways, further development is needed for it to be robust enough for gathering annotations in practice. For reproducibility, data and code are available online: http://github.com/adriapr/crowdairway.git. Public Library of Science 2021-04-22 /pmc/articles/PMC8062042/ /pubmed/33886587 http://dx.doi.org/10.1371/journal.pone.0249580 Text en © 2021 Cheplygina et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Cheplygina, Veronika
Perez-Rovira, Adria
Kuo, Wieying
Tiddens, Harm A. W. M.
de Bruijne, Marleen
Crowdsourcing airway annotations in chest computed tomography images
title Crowdsourcing airway annotations in chest computed tomography images
title_full Crowdsourcing airway annotations in chest computed tomography images
title_fullStr Crowdsourcing airway annotations in chest computed tomography images
title_full_unstemmed Crowdsourcing airway annotations in chest computed tomography images
title_short Crowdsourcing airway annotations in chest computed tomography images
title_sort crowdsourcing airway annotations in chest computed tomography images
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8062042/
https://www.ncbi.nlm.nih.gov/pubmed/33886587
http://dx.doi.org/10.1371/journal.pone.0249580
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