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Crowdsourcing airway annotations in chest computed tomography images
Measuring airways in chest computed tomography (CT) scans is important for characterizing diseases such as cystic fibrosis, yet very time-consuming to perform manually. Machine learning algorithms offer an alternative, but need large sets of annotated scans for good performance. We investigate wheth...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8062042/ https://www.ncbi.nlm.nih.gov/pubmed/33886587 http://dx.doi.org/10.1371/journal.pone.0249580 |
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author | Cheplygina, Veronika Perez-Rovira, Adria Kuo, Wieying Tiddens, Harm A. W. M. de Bruijne, Marleen |
author_facet | Cheplygina, Veronika Perez-Rovira, Adria Kuo, Wieying Tiddens, Harm A. W. M. de Bruijne, Marleen |
author_sort | Cheplygina, Veronika |
collection | PubMed |
description | Measuring airways in chest computed tomography (CT) scans is important for characterizing diseases such as cystic fibrosis, yet very time-consuming to perform manually. Machine learning algorithms offer an alternative, but need large sets of annotated scans for good performance. We investigate whether crowdsourcing can be used to gather airway annotations. We generate image slices at known locations of airways in 24 subjects and request the crowd workers to outline the airway lumen and airway wall. After combining multiple crowd workers, we compare the measurements to those made by the experts in the original scans. Similar to our preliminary study, a large portion of the annotations were excluded, possibly due to workers misunderstanding the instructions. After excluding such annotations, moderate to strong correlations with the expert can be observed, although these correlations are slightly lower than inter-expert correlations. Furthermore, the results across subjects in this study are quite variable. Although the crowd has potential in annotating airways, further development is needed for it to be robust enough for gathering annotations in practice. For reproducibility, data and code are available online: http://github.com/adriapr/crowdairway.git. |
format | Online Article Text |
id | pubmed-8062042 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-80620422021-05-04 Crowdsourcing airway annotations in chest computed tomography images Cheplygina, Veronika Perez-Rovira, Adria Kuo, Wieying Tiddens, Harm A. W. M. de Bruijne, Marleen PLoS One Research Article Measuring airways in chest computed tomography (CT) scans is important for characterizing diseases such as cystic fibrosis, yet very time-consuming to perform manually. Machine learning algorithms offer an alternative, but need large sets of annotated scans for good performance. We investigate whether crowdsourcing can be used to gather airway annotations. We generate image slices at known locations of airways in 24 subjects and request the crowd workers to outline the airway lumen and airway wall. After combining multiple crowd workers, we compare the measurements to those made by the experts in the original scans. Similar to our preliminary study, a large portion of the annotations were excluded, possibly due to workers misunderstanding the instructions. After excluding such annotations, moderate to strong correlations with the expert can be observed, although these correlations are slightly lower than inter-expert correlations. Furthermore, the results across subjects in this study are quite variable. Although the crowd has potential in annotating airways, further development is needed for it to be robust enough for gathering annotations in practice. For reproducibility, data and code are available online: http://github.com/adriapr/crowdairway.git. Public Library of Science 2021-04-22 /pmc/articles/PMC8062042/ /pubmed/33886587 http://dx.doi.org/10.1371/journal.pone.0249580 Text en © 2021 Cheplygina et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Cheplygina, Veronika Perez-Rovira, Adria Kuo, Wieying Tiddens, Harm A. W. M. de Bruijne, Marleen Crowdsourcing airway annotations in chest computed tomography images |
title | Crowdsourcing airway annotations in chest computed tomography images |
title_full | Crowdsourcing airway annotations in chest computed tomography images |
title_fullStr | Crowdsourcing airway annotations in chest computed tomography images |
title_full_unstemmed | Crowdsourcing airway annotations in chest computed tomography images |
title_short | Crowdsourcing airway annotations in chest computed tomography images |
title_sort | crowdsourcing airway annotations in chest computed tomography images |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8062042/ https://www.ncbi.nlm.nih.gov/pubmed/33886587 http://dx.doi.org/10.1371/journal.pone.0249580 |
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