Cargando…

Integrative Analysis of TP53INP2 in Head and Neck Squamous Cell Carcinoma

TP53INP2 plays an important role in regulating gene transcription and starvation-induced autophagy, however, its function in head and neck squamous cell carcinoma (HNSCC) remains unclear. Therefore, we assessed the expression and prognostic value of TP53INP2. In addition, RNAseq, miRNAseq, copy numb...

Descripción completa

Detalles Bibliográficos
Autores principales: Cao, Ruoyan, Liu, Suyang, Zhang, Jiayu, Ren, Xianyue, Chen, Xijuan, Cheng, Bin, Xia, Juan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8062980/
https://www.ncbi.nlm.nih.gov/pubmed/33897760
http://dx.doi.org/10.3389/fgene.2021.630794
_version_ 1783681878570565632
author Cao, Ruoyan
Liu, Suyang
Zhang, Jiayu
Ren, Xianyue
Chen, Xijuan
Cheng, Bin
Xia, Juan
author_facet Cao, Ruoyan
Liu, Suyang
Zhang, Jiayu
Ren, Xianyue
Chen, Xijuan
Cheng, Bin
Xia, Juan
author_sort Cao, Ruoyan
collection PubMed
description TP53INP2 plays an important role in regulating gene transcription and starvation-induced autophagy, however, its function in head and neck squamous cell carcinoma (HNSCC) remains unclear. Therefore, we assessed the expression and prognostic value of TP53INP2. In addition, RNAseq, miRNAseq, copy number variation, and mutation profiles from The Cancer Genome Atlas (TCGA) dataset were applied to evaluate the distinctive genomic patterns related to TP53INP2 expression. We found that TP53INP2 expression was lower in HNSCC compared with normal controls. Patients with higher TP53INP2 expression had longer survival time. Knockdown of TP53INP2 promoted cell viability. Functional analysis exhibited that TP53INP2 was linked to DNA replication, DNA repair, cell cycle, and multiple metabolic pathways. Moreover, TP53INP2 might affect the expression of multiple genes via enhancing the transcriptional activity of nuclear hormone receptors. A competing endogenous RNA (ceRNA) network consisting of 33 lncRNAs, eight miRNAs, and 13 mRNAs was constructed based on the expression of TP53INP2. Taken together, our study highlights the potential value of TP53INP2 in predicting the survival of HNSCC and its important role in the genesis and development of HNSCC.
format Online
Article
Text
id pubmed-8062980
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-80629802021-04-24 Integrative Analysis of TP53INP2 in Head and Neck Squamous Cell Carcinoma Cao, Ruoyan Liu, Suyang Zhang, Jiayu Ren, Xianyue Chen, Xijuan Cheng, Bin Xia, Juan Front Genet Genetics TP53INP2 plays an important role in regulating gene transcription and starvation-induced autophagy, however, its function in head and neck squamous cell carcinoma (HNSCC) remains unclear. Therefore, we assessed the expression and prognostic value of TP53INP2. In addition, RNAseq, miRNAseq, copy number variation, and mutation profiles from The Cancer Genome Atlas (TCGA) dataset were applied to evaluate the distinctive genomic patterns related to TP53INP2 expression. We found that TP53INP2 expression was lower in HNSCC compared with normal controls. Patients with higher TP53INP2 expression had longer survival time. Knockdown of TP53INP2 promoted cell viability. Functional analysis exhibited that TP53INP2 was linked to DNA replication, DNA repair, cell cycle, and multiple metabolic pathways. Moreover, TP53INP2 might affect the expression of multiple genes via enhancing the transcriptional activity of nuclear hormone receptors. A competing endogenous RNA (ceRNA) network consisting of 33 lncRNAs, eight miRNAs, and 13 mRNAs was constructed based on the expression of TP53INP2. Taken together, our study highlights the potential value of TP53INP2 in predicting the survival of HNSCC and its important role in the genesis and development of HNSCC. Frontiers Media S.A. 2021-04-09 /pmc/articles/PMC8062980/ /pubmed/33897760 http://dx.doi.org/10.3389/fgene.2021.630794 Text en Copyright © 2021 Cao, Liu, Zhang, Ren, Chen, Cheng and Xia. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Cao, Ruoyan
Liu, Suyang
Zhang, Jiayu
Ren, Xianyue
Chen, Xijuan
Cheng, Bin
Xia, Juan
Integrative Analysis of TP53INP2 in Head and Neck Squamous Cell Carcinoma
title Integrative Analysis of TP53INP2 in Head and Neck Squamous Cell Carcinoma
title_full Integrative Analysis of TP53INP2 in Head and Neck Squamous Cell Carcinoma
title_fullStr Integrative Analysis of TP53INP2 in Head and Neck Squamous Cell Carcinoma
title_full_unstemmed Integrative Analysis of TP53INP2 in Head and Neck Squamous Cell Carcinoma
title_short Integrative Analysis of TP53INP2 in Head and Neck Squamous Cell Carcinoma
title_sort integrative analysis of tp53inp2 in head and neck squamous cell carcinoma
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8062980/
https://www.ncbi.nlm.nih.gov/pubmed/33897760
http://dx.doi.org/10.3389/fgene.2021.630794
work_keys_str_mv AT caoruoyan integrativeanalysisoftp53inp2inheadandnecksquamouscellcarcinoma
AT liusuyang integrativeanalysisoftp53inp2inheadandnecksquamouscellcarcinoma
AT zhangjiayu integrativeanalysisoftp53inp2inheadandnecksquamouscellcarcinoma
AT renxianyue integrativeanalysisoftp53inp2inheadandnecksquamouscellcarcinoma
AT chenxijuan integrativeanalysisoftp53inp2inheadandnecksquamouscellcarcinoma
AT chengbin integrativeanalysisoftp53inp2inheadandnecksquamouscellcarcinoma
AT xiajuan integrativeanalysisoftp53inp2inheadandnecksquamouscellcarcinoma