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SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma

INTRODUCTION: SUMOylation is one of the post-translational modifications. The relationship between the expression of SUMOylation regulators and the prognosis of glioblastoma is not quite clear. MATERIALS AND METHODS: The single nucleotide variant data, the transcriptome data, and survival informatio...

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Autores principales: Li, Xiaozhi, Meng, Yutong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8063029/
https://www.ncbi.nlm.nih.gov/pubmed/33898460
http://dx.doi.org/10.3389/fcell.2021.658856
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author Li, Xiaozhi
Meng, Yutong
author_facet Li, Xiaozhi
Meng, Yutong
author_sort Li, Xiaozhi
collection PubMed
description INTRODUCTION: SUMOylation is one of the post-translational modifications. The relationship between the expression of SUMOylation regulators and the prognosis of glioblastoma is not quite clear. MATERIALS AND METHODS: The single nucleotide variant data, the transcriptome data, and survival information were acquired from The Cancer Genome Atlas, Gene Expression Omnibus, and cBioportal database. Wilcoxon test was used to analyze differentially expressed genes between glioblastoma and normal brain tissues. Gene set enrichment analysis was conducted to find the possible functions. One risk scoring model was built by the least absolute shrinkage and selection operator Cox regression. Kaplain–Meier survival curves and receiver operating characteristic curves were applied to evaluate the effectiveness of the model in predicting the prognosis of glioblastoma. RESULTS: Single-nucleotide variant mutations were found in SENP7, SENP3, SENP5, PIAS3, RANBP2, USPL1, SENP1, PIAS2, SENP2, and PIAS1. Moreover, UBE2I, UBA2, PIAS3, and SENP1 were highly expressed in glioblastoma, whereas PIAS1, RANBP2, SENP5, and SENP2 were downregulated in glioblastoma. Functional enrichment analysis showed that the SUMOylation regulators of glioblastoma might involve cell cycle, DNA replication, and other functions. A prognostic model of glioblastoma was constructed based on SUMOylation regulator-related molecules (ATF7IP, CCNB1IP1, and LBH). Kaplain–Meier survival curves and receiver operating characteristic curves showed that the model had a strong ability to predict the overall survival of glioblastoma. CONCLUSION: This study analyzed the expression of 15 SUMOylation regulators in glioblastoma. The risk assessment model was constructed based on the SUMOylation regulator-related genes, which had a strong predictive ability for the overall survival of patients with glioblastoma. It might provide targets for the study of the relationship between SUMOylation and glioblastoma.
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spelling pubmed-80630292021-04-24 SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma Li, Xiaozhi Meng, Yutong Front Cell Dev Biol Cell and Developmental Biology INTRODUCTION: SUMOylation is one of the post-translational modifications. The relationship between the expression of SUMOylation regulators and the prognosis of glioblastoma is not quite clear. MATERIALS AND METHODS: The single nucleotide variant data, the transcriptome data, and survival information were acquired from The Cancer Genome Atlas, Gene Expression Omnibus, and cBioportal database. Wilcoxon test was used to analyze differentially expressed genes between glioblastoma and normal brain tissues. Gene set enrichment analysis was conducted to find the possible functions. One risk scoring model was built by the least absolute shrinkage and selection operator Cox regression. Kaplain–Meier survival curves and receiver operating characteristic curves were applied to evaluate the effectiveness of the model in predicting the prognosis of glioblastoma. RESULTS: Single-nucleotide variant mutations were found in SENP7, SENP3, SENP5, PIAS3, RANBP2, USPL1, SENP1, PIAS2, SENP2, and PIAS1. Moreover, UBE2I, UBA2, PIAS3, and SENP1 were highly expressed in glioblastoma, whereas PIAS1, RANBP2, SENP5, and SENP2 were downregulated in glioblastoma. Functional enrichment analysis showed that the SUMOylation regulators of glioblastoma might involve cell cycle, DNA replication, and other functions. A prognostic model of glioblastoma was constructed based on SUMOylation regulator-related molecules (ATF7IP, CCNB1IP1, and LBH). Kaplain–Meier survival curves and receiver operating characteristic curves showed that the model had a strong ability to predict the overall survival of glioblastoma. CONCLUSION: This study analyzed the expression of 15 SUMOylation regulators in glioblastoma. The risk assessment model was constructed based on the SUMOylation regulator-related genes, which had a strong predictive ability for the overall survival of patients with glioblastoma. It might provide targets for the study of the relationship between SUMOylation and glioblastoma. Frontiers Media S.A. 2021-04-09 /pmc/articles/PMC8063029/ /pubmed/33898460 http://dx.doi.org/10.3389/fcell.2021.658856 Text en Copyright © 2021 Li and Meng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cell and Developmental Biology
Li, Xiaozhi
Meng, Yutong
SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma
title SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma
title_full SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma
title_fullStr SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma
title_full_unstemmed SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma
title_short SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma
title_sort sumoylation regulator-related molecules can be used as prognostic biomarkers for glioblastoma
topic Cell and Developmental Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8063029/
https://www.ncbi.nlm.nih.gov/pubmed/33898460
http://dx.doi.org/10.3389/fcell.2021.658856
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