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SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma
INTRODUCTION: SUMOylation is one of the post-translational modifications. The relationship between the expression of SUMOylation regulators and the prognosis of glioblastoma is not quite clear. MATERIALS AND METHODS: The single nucleotide variant data, the transcriptome data, and survival informatio...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8063029/ https://www.ncbi.nlm.nih.gov/pubmed/33898460 http://dx.doi.org/10.3389/fcell.2021.658856 |
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author | Li, Xiaozhi Meng, Yutong |
author_facet | Li, Xiaozhi Meng, Yutong |
author_sort | Li, Xiaozhi |
collection | PubMed |
description | INTRODUCTION: SUMOylation is one of the post-translational modifications. The relationship between the expression of SUMOylation regulators and the prognosis of glioblastoma is not quite clear. MATERIALS AND METHODS: The single nucleotide variant data, the transcriptome data, and survival information were acquired from The Cancer Genome Atlas, Gene Expression Omnibus, and cBioportal database. Wilcoxon test was used to analyze differentially expressed genes between glioblastoma and normal brain tissues. Gene set enrichment analysis was conducted to find the possible functions. One risk scoring model was built by the least absolute shrinkage and selection operator Cox regression. Kaplain–Meier survival curves and receiver operating characteristic curves were applied to evaluate the effectiveness of the model in predicting the prognosis of glioblastoma. RESULTS: Single-nucleotide variant mutations were found in SENP7, SENP3, SENP5, PIAS3, RANBP2, USPL1, SENP1, PIAS2, SENP2, and PIAS1. Moreover, UBE2I, UBA2, PIAS3, and SENP1 were highly expressed in glioblastoma, whereas PIAS1, RANBP2, SENP5, and SENP2 were downregulated in glioblastoma. Functional enrichment analysis showed that the SUMOylation regulators of glioblastoma might involve cell cycle, DNA replication, and other functions. A prognostic model of glioblastoma was constructed based on SUMOylation regulator-related molecules (ATF7IP, CCNB1IP1, and LBH). Kaplain–Meier survival curves and receiver operating characteristic curves showed that the model had a strong ability to predict the overall survival of glioblastoma. CONCLUSION: This study analyzed the expression of 15 SUMOylation regulators in glioblastoma. The risk assessment model was constructed based on the SUMOylation regulator-related genes, which had a strong predictive ability for the overall survival of patients with glioblastoma. It might provide targets for the study of the relationship between SUMOylation and glioblastoma. |
format | Online Article Text |
id | pubmed-8063029 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-80630292021-04-24 SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma Li, Xiaozhi Meng, Yutong Front Cell Dev Biol Cell and Developmental Biology INTRODUCTION: SUMOylation is one of the post-translational modifications. The relationship between the expression of SUMOylation regulators and the prognosis of glioblastoma is not quite clear. MATERIALS AND METHODS: The single nucleotide variant data, the transcriptome data, and survival information were acquired from The Cancer Genome Atlas, Gene Expression Omnibus, and cBioportal database. Wilcoxon test was used to analyze differentially expressed genes between glioblastoma and normal brain tissues. Gene set enrichment analysis was conducted to find the possible functions. One risk scoring model was built by the least absolute shrinkage and selection operator Cox regression. Kaplain–Meier survival curves and receiver operating characteristic curves were applied to evaluate the effectiveness of the model in predicting the prognosis of glioblastoma. RESULTS: Single-nucleotide variant mutations were found in SENP7, SENP3, SENP5, PIAS3, RANBP2, USPL1, SENP1, PIAS2, SENP2, and PIAS1. Moreover, UBE2I, UBA2, PIAS3, and SENP1 were highly expressed in glioblastoma, whereas PIAS1, RANBP2, SENP5, and SENP2 were downregulated in glioblastoma. Functional enrichment analysis showed that the SUMOylation regulators of glioblastoma might involve cell cycle, DNA replication, and other functions. A prognostic model of glioblastoma was constructed based on SUMOylation regulator-related molecules (ATF7IP, CCNB1IP1, and LBH). Kaplain–Meier survival curves and receiver operating characteristic curves showed that the model had a strong ability to predict the overall survival of glioblastoma. CONCLUSION: This study analyzed the expression of 15 SUMOylation regulators in glioblastoma. The risk assessment model was constructed based on the SUMOylation regulator-related genes, which had a strong predictive ability for the overall survival of patients with glioblastoma. It might provide targets for the study of the relationship between SUMOylation and glioblastoma. Frontiers Media S.A. 2021-04-09 /pmc/articles/PMC8063029/ /pubmed/33898460 http://dx.doi.org/10.3389/fcell.2021.658856 Text en Copyright © 2021 Li and Meng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cell and Developmental Biology Li, Xiaozhi Meng, Yutong SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma |
title | SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma |
title_full | SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma |
title_fullStr | SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma |
title_full_unstemmed | SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma |
title_short | SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma |
title_sort | sumoylation regulator-related molecules can be used as prognostic biomarkers for glioblastoma |
topic | Cell and Developmental Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8063029/ https://www.ncbi.nlm.nih.gov/pubmed/33898460 http://dx.doi.org/10.3389/fcell.2021.658856 |
work_keys_str_mv | AT lixiaozhi sumoylationregulatorrelatedmoleculescanbeusedasprognosticbiomarkersforglioblastoma AT mengyutong sumoylationregulatorrelatedmoleculescanbeusedasprognosticbiomarkersforglioblastoma |