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One potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data

Teratozoospermia is a common category of male infertility and with the increase in clinical patients and the increasing sophistication of assisted reproductive technology, there is an urgent need for an accurate semen diagnostic biomarker to accomplish rapid diagnosis of patients with teratozoosperm...

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Detalles Bibliográficos
Autores principales: Han, Baoquan, Wang, Lu, Yu, Shuai, Ge, Wei, Li, Yaqi, Jiang, Hui, Shen, Wei, Sun, Zhongyi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8064145/
https://www.ncbi.nlm.nih.gov/pubmed/33819193
http://dx.doi.org/10.18632/aging.202781
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author Han, Baoquan
Wang, Lu
Yu, Shuai
Ge, Wei
Li, Yaqi
Jiang, Hui
Shen, Wei
Sun, Zhongyi
author_facet Han, Baoquan
Wang, Lu
Yu, Shuai
Ge, Wei
Li, Yaqi
Jiang, Hui
Shen, Wei
Sun, Zhongyi
author_sort Han, Baoquan
collection PubMed
description Teratozoospermia is a common category of male infertility and with the increase in clinical patients and the increasing sophistication of assisted reproductive technology, there is an urgent need for an accurate semen diagnostic biomarker to accomplish rapid diagnosis of patients with teratozoospermia and accurately assess the success rate of assisted reproductive technologies. In this study, we performed gene differential expression analysis on two publicly available DNA microarray datasets (GSE6872 and GSE6967), followed by GSEA analysis to parse their enriched KEGG pathways, and WGCNA analysis to obtain the most highly correlated modules. Subsequent in-depth comparative analysis of the modules screened into the two datasets resulted in a gene set containing the identical expression trend, and then the differentially expressed genes in the set were screened using the corresponding criteria. Finally, three differentially expressed genes common to both datasets were selected. In addition, we validated the expression changes of this gene using another dataset (GSE6968) and in vitro experiments, and only screened one potential semen biomarker gene whose expression trend was identical to those in other datasets, which will also provide an important theoretical basis for the diagnosis and treatment of teratozoospermia.
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spelling pubmed-80641452021-04-26 One potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data Han, Baoquan Wang, Lu Yu, Shuai Ge, Wei Li, Yaqi Jiang, Hui Shen, Wei Sun, Zhongyi Aging (Albany NY) Research Paper Teratozoospermia is a common category of male infertility and with the increase in clinical patients and the increasing sophistication of assisted reproductive technology, there is an urgent need for an accurate semen diagnostic biomarker to accomplish rapid diagnosis of patients with teratozoospermia and accurately assess the success rate of assisted reproductive technologies. In this study, we performed gene differential expression analysis on two publicly available DNA microarray datasets (GSE6872 and GSE6967), followed by GSEA analysis to parse their enriched KEGG pathways, and WGCNA analysis to obtain the most highly correlated modules. Subsequent in-depth comparative analysis of the modules screened into the two datasets resulted in a gene set containing the identical expression trend, and then the differentially expressed genes in the set were screened using the corresponding criteria. Finally, three differentially expressed genes common to both datasets were selected. In addition, we validated the expression changes of this gene using another dataset (GSE6968) and in vitro experiments, and only screened one potential semen biomarker gene whose expression trend was identical to those in other datasets, which will also provide an important theoretical basis for the diagnosis and treatment of teratozoospermia. Impact Journals 2021-03-26 /pmc/articles/PMC8064145/ /pubmed/33819193 http://dx.doi.org/10.18632/aging.202781 Text en Copyright: © 2021 Han et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Han, Baoquan
Wang, Lu
Yu, Shuai
Ge, Wei
Li, Yaqi
Jiang, Hui
Shen, Wei
Sun, Zhongyi
One potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data
title One potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data
title_full One potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data
title_fullStr One potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data
title_full_unstemmed One potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data
title_short One potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data
title_sort one potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8064145/
https://www.ncbi.nlm.nih.gov/pubmed/33819193
http://dx.doi.org/10.18632/aging.202781
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