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One potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data
Teratozoospermia is a common category of male infertility and with the increase in clinical patients and the increasing sophistication of assisted reproductive technology, there is an urgent need for an accurate semen diagnostic biomarker to accomplish rapid diagnosis of patients with teratozoosperm...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8064145/ https://www.ncbi.nlm.nih.gov/pubmed/33819193 http://dx.doi.org/10.18632/aging.202781 |
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author | Han, Baoquan Wang, Lu Yu, Shuai Ge, Wei Li, Yaqi Jiang, Hui Shen, Wei Sun, Zhongyi |
author_facet | Han, Baoquan Wang, Lu Yu, Shuai Ge, Wei Li, Yaqi Jiang, Hui Shen, Wei Sun, Zhongyi |
author_sort | Han, Baoquan |
collection | PubMed |
description | Teratozoospermia is a common category of male infertility and with the increase in clinical patients and the increasing sophistication of assisted reproductive technology, there is an urgent need for an accurate semen diagnostic biomarker to accomplish rapid diagnosis of patients with teratozoospermia and accurately assess the success rate of assisted reproductive technologies. In this study, we performed gene differential expression analysis on two publicly available DNA microarray datasets (GSE6872 and GSE6967), followed by GSEA analysis to parse their enriched KEGG pathways, and WGCNA analysis to obtain the most highly correlated modules. Subsequent in-depth comparative analysis of the modules screened into the two datasets resulted in a gene set containing the identical expression trend, and then the differentially expressed genes in the set were screened using the corresponding criteria. Finally, three differentially expressed genes common to both datasets were selected. In addition, we validated the expression changes of this gene using another dataset (GSE6968) and in vitro experiments, and only screened one potential semen biomarker gene whose expression trend was identical to those in other datasets, which will also provide an important theoretical basis for the diagnosis and treatment of teratozoospermia. |
format | Online Article Text |
id | pubmed-8064145 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Impact Journals |
record_format | MEDLINE/PubMed |
spelling | pubmed-80641452021-04-26 One potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data Han, Baoquan Wang, Lu Yu, Shuai Ge, Wei Li, Yaqi Jiang, Hui Shen, Wei Sun, Zhongyi Aging (Albany NY) Research Paper Teratozoospermia is a common category of male infertility and with the increase in clinical patients and the increasing sophistication of assisted reproductive technology, there is an urgent need for an accurate semen diagnostic biomarker to accomplish rapid diagnosis of patients with teratozoospermia and accurately assess the success rate of assisted reproductive technologies. In this study, we performed gene differential expression analysis on two publicly available DNA microarray datasets (GSE6872 and GSE6967), followed by GSEA analysis to parse their enriched KEGG pathways, and WGCNA analysis to obtain the most highly correlated modules. Subsequent in-depth comparative analysis of the modules screened into the two datasets resulted in a gene set containing the identical expression trend, and then the differentially expressed genes in the set were screened using the corresponding criteria. Finally, three differentially expressed genes common to both datasets were selected. In addition, we validated the expression changes of this gene using another dataset (GSE6968) and in vitro experiments, and only screened one potential semen biomarker gene whose expression trend was identical to those in other datasets, which will also provide an important theoretical basis for the diagnosis and treatment of teratozoospermia. Impact Journals 2021-03-26 /pmc/articles/PMC8064145/ /pubmed/33819193 http://dx.doi.org/10.18632/aging.202781 Text en Copyright: © 2021 Han et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Han, Baoquan Wang, Lu Yu, Shuai Ge, Wei Li, Yaqi Jiang, Hui Shen, Wei Sun, Zhongyi One potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data |
title | One potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data |
title_full | One potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data |
title_fullStr | One potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data |
title_full_unstemmed | One potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data |
title_short | One potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data |
title_sort | one potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8064145/ https://www.ncbi.nlm.nih.gov/pubmed/33819193 http://dx.doi.org/10.18632/aging.202781 |
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