Cargando…
A novel immune-related prognostic signature in epithelial ovarian carcinoma
The immune response is associated with the progression and prognosis of epithelial ovarian cancer (EOC). However, the roles of infiltrated immune cells and immune-related genes (IRGs) in EOC have not been reported comprehensively. In the current study, the differentially expressed genes (DEGs) were...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8064207/ https://www.ncbi.nlm.nih.gov/pubmed/33819196 http://dx.doi.org/10.18632/aging.202792 |
_version_ | 1783682086255722496 |
---|---|
author | Su, Tong Zhang, Panpan Zhao, Fujun Zhang, Shu |
author_facet | Su, Tong Zhang, Panpan Zhao, Fujun Zhang, Shu |
author_sort | Su, Tong |
collection | PubMed |
description | The immune response is associated with the progression and prognosis of epithelial ovarian cancer (EOC). However, the roles of infiltrated immune cells and immune-related genes (IRGs) in EOC have not been reported comprehensively. In the current study, the differentially expressed genes (DEGs) were filtered based on the integrated gene expression data acquired from The University of California at Santa Cruz (UCSC) Genome Browser. Then, IRGs and transcriptional factors (TFs) were screened based on the ImmPort database and Cistrome database. A total of 501 differentially expressed IRGs, and 76 TFs were detected. A TF-mediated network was constructed by univariate Cox analysis to reveal the potential regulatory mechanisms of IRGs. Next, a nine immune-based prognostic risk model using nine IRGs (PI3, CXCL10, CXCL11, LCN6, CCL17, CCL25, MIF, CX3CR1, and CSPG5) was established. Based on the risk score worked out from the signature, the EOC patients could be classified into low-risk and high-risk groups. Furthermore, the immune landscapes, elevated by the cell-type identification by estimating relative subsets of RNA transcripts (CIBERSORT) algorithm and the Tumor Immune Estimation Resource (TIMER) database, effectuated different patterns in two groups. Thus, an immune-based prognostic risk model of EOC elucidates the immune status in the tumor microenvironment, and hence, could be used for prognosis. |
format | Online Article Text |
id | pubmed-8064207 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Impact Journals |
record_format | MEDLINE/PubMed |
spelling | pubmed-80642072021-04-26 A novel immune-related prognostic signature in epithelial ovarian carcinoma Su, Tong Zhang, Panpan Zhao, Fujun Zhang, Shu Aging (Albany NY) Research Paper The immune response is associated with the progression and prognosis of epithelial ovarian cancer (EOC). However, the roles of infiltrated immune cells and immune-related genes (IRGs) in EOC have not been reported comprehensively. In the current study, the differentially expressed genes (DEGs) were filtered based on the integrated gene expression data acquired from The University of California at Santa Cruz (UCSC) Genome Browser. Then, IRGs and transcriptional factors (TFs) were screened based on the ImmPort database and Cistrome database. A total of 501 differentially expressed IRGs, and 76 TFs were detected. A TF-mediated network was constructed by univariate Cox analysis to reveal the potential regulatory mechanisms of IRGs. Next, a nine immune-based prognostic risk model using nine IRGs (PI3, CXCL10, CXCL11, LCN6, CCL17, CCL25, MIF, CX3CR1, and CSPG5) was established. Based on the risk score worked out from the signature, the EOC patients could be classified into low-risk and high-risk groups. Furthermore, the immune landscapes, elevated by the cell-type identification by estimating relative subsets of RNA transcripts (CIBERSORT) algorithm and the Tumor Immune Estimation Resource (TIMER) database, effectuated different patterns in two groups. Thus, an immune-based prognostic risk model of EOC elucidates the immune status in the tumor microenvironment, and hence, could be used for prognosis. Impact Journals 2021-04-04 /pmc/articles/PMC8064207/ /pubmed/33819196 http://dx.doi.org/10.18632/aging.202792 Text en Copyright: © 2021 Su et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Su, Tong Zhang, Panpan Zhao, Fujun Zhang, Shu A novel immune-related prognostic signature in epithelial ovarian carcinoma |
title | A novel immune-related prognostic signature in epithelial ovarian carcinoma |
title_full | A novel immune-related prognostic signature in epithelial ovarian carcinoma |
title_fullStr | A novel immune-related prognostic signature in epithelial ovarian carcinoma |
title_full_unstemmed | A novel immune-related prognostic signature in epithelial ovarian carcinoma |
title_short | A novel immune-related prognostic signature in epithelial ovarian carcinoma |
title_sort | novel immune-related prognostic signature in epithelial ovarian carcinoma |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8064207/ https://www.ncbi.nlm.nih.gov/pubmed/33819196 http://dx.doi.org/10.18632/aging.202792 |
work_keys_str_mv | AT sutong anovelimmunerelatedprognosticsignatureinepithelialovariancarcinoma AT zhangpanpan anovelimmunerelatedprognosticsignatureinepithelialovariancarcinoma AT zhaofujun anovelimmunerelatedprognosticsignatureinepithelialovariancarcinoma AT zhangshu anovelimmunerelatedprognosticsignatureinepithelialovariancarcinoma AT sutong novelimmunerelatedprognosticsignatureinepithelialovariancarcinoma AT zhangpanpan novelimmunerelatedprognosticsignatureinepithelialovariancarcinoma AT zhaofujun novelimmunerelatedprognosticsignatureinepithelialovariancarcinoma AT zhangshu novelimmunerelatedprognosticsignatureinepithelialovariancarcinoma |