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A novel immune-related prognostic signature in epithelial ovarian carcinoma

The immune response is associated with the progression and prognosis of epithelial ovarian cancer (EOC). However, the roles of infiltrated immune cells and immune-related genes (IRGs) in EOC have not been reported comprehensively. In the current study, the differentially expressed genes (DEGs) were...

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Autores principales: Su, Tong, Zhang, Panpan, Zhao, Fujun, Zhang, Shu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8064207/
https://www.ncbi.nlm.nih.gov/pubmed/33819196
http://dx.doi.org/10.18632/aging.202792
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author Su, Tong
Zhang, Panpan
Zhao, Fujun
Zhang, Shu
author_facet Su, Tong
Zhang, Panpan
Zhao, Fujun
Zhang, Shu
author_sort Su, Tong
collection PubMed
description The immune response is associated with the progression and prognosis of epithelial ovarian cancer (EOC). However, the roles of infiltrated immune cells and immune-related genes (IRGs) in EOC have not been reported comprehensively. In the current study, the differentially expressed genes (DEGs) were filtered based on the integrated gene expression data acquired from The University of California at Santa Cruz (UCSC) Genome Browser. Then, IRGs and transcriptional factors (TFs) were screened based on the ImmPort database and Cistrome database. A total of 501 differentially expressed IRGs, and 76 TFs were detected. A TF-mediated network was constructed by univariate Cox analysis to reveal the potential regulatory mechanisms of IRGs. Next, a nine immune-based prognostic risk model using nine IRGs (PI3, CXCL10, CXCL11, LCN6, CCL17, CCL25, MIF, CX3CR1, and CSPG5) was established. Based on the risk score worked out from the signature, the EOC patients could be classified into low-risk and high-risk groups. Furthermore, the immune landscapes, elevated by the cell-type identification by estimating relative subsets of RNA transcripts (CIBERSORT) algorithm and the Tumor Immune Estimation Resource (TIMER) database, effectuated different patterns in two groups. Thus, an immune-based prognostic risk model of EOC elucidates the immune status in the tumor microenvironment, and hence, could be used for prognosis.
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spelling pubmed-80642072021-04-26 A novel immune-related prognostic signature in epithelial ovarian carcinoma Su, Tong Zhang, Panpan Zhao, Fujun Zhang, Shu Aging (Albany NY) Research Paper The immune response is associated with the progression and prognosis of epithelial ovarian cancer (EOC). However, the roles of infiltrated immune cells and immune-related genes (IRGs) in EOC have not been reported comprehensively. In the current study, the differentially expressed genes (DEGs) were filtered based on the integrated gene expression data acquired from The University of California at Santa Cruz (UCSC) Genome Browser. Then, IRGs and transcriptional factors (TFs) were screened based on the ImmPort database and Cistrome database. A total of 501 differentially expressed IRGs, and 76 TFs were detected. A TF-mediated network was constructed by univariate Cox analysis to reveal the potential regulatory mechanisms of IRGs. Next, a nine immune-based prognostic risk model using nine IRGs (PI3, CXCL10, CXCL11, LCN6, CCL17, CCL25, MIF, CX3CR1, and CSPG5) was established. Based on the risk score worked out from the signature, the EOC patients could be classified into low-risk and high-risk groups. Furthermore, the immune landscapes, elevated by the cell-type identification by estimating relative subsets of RNA transcripts (CIBERSORT) algorithm and the Tumor Immune Estimation Resource (TIMER) database, effectuated different patterns in two groups. Thus, an immune-based prognostic risk model of EOC elucidates the immune status in the tumor microenvironment, and hence, could be used for prognosis. Impact Journals 2021-04-04 /pmc/articles/PMC8064207/ /pubmed/33819196 http://dx.doi.org/10.18632/aging.202792 Text en Copyright: © 2021 Su et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Su, Tong
Zhang, Panpan
Zhao, Fujun
Zhang, Shu
A novel immune-related prognostic signature in epithelial ovarian carcinoma
title A novel immune-related prognostic signature in epithelial ovarian carcinoma
title_full A novel immune-related prognostic signature in epithelial ovarian carcinoma
title_fullStr A novel immune-related prognostic signature in epithelial ovarian carcinoma
title_full_unstemmed A novel immune-related prognostic signature in epithelial ovarian carcinoma
title_short A novel immune-related prognostic signature in epithelial ovarian carcinoma
title_sort novel immune-related prognostic signature in epithelial ovarian carcinoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8064207/
https://www.ncbi.nlm.nih.gov/pubmed/33819196
http://dx.doi.org/10.18632/aging.202792
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