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A novel algorithm to detect non-wear time from raw accelerometer data using deep convolutional neural networks

To date, non-wear detection algorithms commonly employ a 30, 60, or even 90 mins interval or window in which acceleration values need to be below a threshold value. A major drawback of such intervals is that they need to be long enough to prevent false positives (type I errors), while short enough t...

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Autores principales: Syed, Shaheen, Morseth, Bente, Hopstock, Laila A., Horsch, Alexander
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8065130/
https://www.ncbi.nlm.nih.gov/pubmed/33893345
http://dx.doi.org/10.1038/s41598-021-87757-z
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author Syed, Shaheen
Morseth, Bente
Hopstock, Laila A.
Horsch, Alexander
author_facet Syed, Shaheen
Morseth, Bente
Hopstock, Laila A.
Horsch, Alexander
author_sort Syed, Shaheen
collection PubMed
description To date, non-wear detection algorithms commonly employ a 30, 60, or even 90 mins interval or window in which acceleration values need to be below a threshold value. A major drawback of such intervals is that they need to be long enough to prevent false positives (type I errors), while short enough to prevent false negatives (type II errors), which limits detecting both short and longer episodes of non-wear time. In this paper, we propose a novel non-wear detection algorithm that eliminates the need for an interval. Rather than inspecting acceleration within intervals, we explore acceleration right before and right after an episode of non-wear time. We trained a deep convolutional neural network that was able to infer non-wear time by detecting when the accelerometer was removed and when it was placed back on again. We evaluate our algorithm against several baseline and existing non-wear algorithms, and our algorithm achieves a perfect precision, a recall of 0.9962, and an F1 score of 0.9981, outperforming all evaluated algorithms. Although our algorithm was developed using patterns learned from a hip-worn accelerometer, we propose algorithmic steps that can easily be applied to a wrist-worn accelerometer and a retrained classification model.
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spelling pubmed-80651302021-04-27 A novel algorithm to detect non-wear time from raw accelerometer data using deep convolutional neural networks Syed, Shaheen Morseth, Bente Hopstock, Laila A. Horsch, Alexander Sci Rep Article To date, non-wear detection algorithms commonly employ a 30, 60, or even 90 mins interval or window in which acceleration values need to be below a threshold value. A major drawback of such intervals is that they need to be long enough to prevent false positives (type I errors), while short enough to prevent false negatives (type II errors), which limits detecting both short and longer episodes of non-wear time. In this paper, we propose a novel non-wear detection algorithm that eliminates the need for an interval. Rather than inspecting acceleration within intervals, we explore acceleration right before and right after an episode of non-wear time. We trained a deep convolutional neural network that was able to infer non-wear time by detecting when the accelerometer was removed and when it was placed back on again. We evaluate our algorithm against several baseline and existing non-wear algorithms, and our algorithm achieves a perfect precision, a recall of 0.9962, and an F1 score of 0.9981, outperforming all evaluated algorithms. Although our algorithm was developed using patterns learned from a hip-worn accelerometer, we propose algorithmic steps that can easily be applied to a wrist-worn accelerometer and a retrained classification model. Nature Publishing Group UK 2021-04-23 /pmc/articles/PMC8065130/ /pubmed/33893345 http://dx.doi.org/10.1038/s41598-021-87757-z Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Syed, Shaheen
Morseth, Bente
Hopstock, Laila A.
Horsch, Alexander
A novel algorithm to detect non-wear time from raw accelerometer data using deep convolutional neural networks
title A novel algorithm to detect non-wear time from raw accelerometer data using deep convolutional neural networks
title_full A novel algorithm to detect non-wear time from raw accelerometer data using deep convolutional neural networks
title_fullStr A novel algorithm to detect non-wear time from raw accelerometer data using deep convolutional neural networks
title_full_unstemmed A novel algorithm to detect non-wear time from raw accelerometer data using deep convolutional neural networks
title_short A novel algorithm to detect non-wear time from raw accelerometer data using deep convolutional neural networks
title_sort novel algorithm to detect non-wear time from raw accelerometer data using deep convolutional neural networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8065130/
https://www.ncbi.nlm.nih.gov/pubmed/33893345
http://dx.doi.org/10.1038/s41598-021-87757-z
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