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Extended Evaluation of Viral Diversity in Lake Baikal through Metagenomics

Lake Baikal is a unique oligotrophic freshwater lake with unusually cold conditions and amazing biological diversity. Studies of the lake’s viral communities have begun recently, and their full diversity is not elucidated yet. Here, we performed DNA viral metagenomic analysis on integral samples fro...

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Autores principales: Butina, Tatyana V., Bukin, Yurij S., Petrushin, Ivan S., Tupikin, Alexey E., Kabilov, Marsel R., Belikov, Sergey I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8066274/
https://www.ncbi.nlm.nih.gov/pubmed/33916464
http://dx.doi.org/10.3390/microorganisms9040760
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author Butina, Tatyana V.
Bukin, Yurij S.
Petrushin, Ivan S.
Tupikin, Alexey E.
Kabilov, Marsel R.
Belikov, Sergey I.
author_facet Butina, Tatyana V.
Bukin, Yurij S.
Petrushin, Ivan S.
Tupikin, Alexey E.
Kabilov, Marsel R.
Belikov, Sergey I.
author_sort Butina, Tatyana V.
collection PubMed
description Lake Baikal is a unique oligotrophic freshwater lake with unusually cold conditions and amazing biological diversity. Studies of the lake’s viral communities have begun recently, and their full diversity is not elucidated yet. Here, we performed DNA viral metagenomic analysis on integral samples from four different deep-water and shallow stations of the southern and central basins of the lake. There was a strict distinction of viral communities in areas with different environmental conditions. Comparative analysis with other freshwater lakes revealed the highest similarity of Baikal viromes with those of the Asian lakes Soyang and Biwa. Analysis of new data, together with previously published data allowed us to get a deeper insight into the diversity and functional potential of Baikal viruses; however, the true diversity of Baikal viruses in the lake ecosystem remains still unknown. The new metaviromic data will be useful for future studies of viral composition, distribution, and the dynamics associated with global climatic and anthropogenic impacts on this ecosystem.
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spelling pubmed-80662742021-04-25 Extended Evaluation of Viral Diversity in Lake Baikal through Metagenomics Butina, Tatyana V. Bukin, Yurij S. Petrushin, Ivan S. Tupikin, Alexey E. Kabilov, Marsel R. Belikov, Sergey I. Microorganisms Article Lake Baikal is a unique oligotrophic freshwater lake with unusually cold conditions and amazing biological diversity. Studies of the lake’s viral communities have begun recently, and their full diversity is not elucidated yet. Here, we performed DNA viral metagenomic analysis on integral samples from four different deep-water and shallow stations of the southern and central basins of the lake. There was a strict distinction of viral communities in areas with different environmental conditions. Comparative analysis with other freshwater lakes revealed the highest similarity of Baikal viromes with those of the Asian lakes Soyang and Biwa. Analysis of new data, together with previously published data allowed us to get a deeper insight into the diversity and functional potential of Baikal viruses; however, the true diversity of Baikal viruses in the lake ecosystem remains still unknown. The new metaviromic data will be useful for future studies of viral composition, distribution, and the dynamics associated with global climatic and anthropogenic impacts on this ecosystem. MDPI 2021-04-05 /pmc/articles/PMC8066274/ /pubmed/33916464 http://dx.doi.org/10.3390/microorganisms9040760 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Butina, Tatyana V.
Bukin, Yurij S.
Petrushin, Ivan S.
Tupikin, Alexey E.
Kabilov, Marsel R.
Belikov, Sergey I.
Extended Evaluation of Viral Diversity in Lake Baikal through Metagenomics
title Extended Evaluation of Viral Diversity in Lake Baikal through Metagenomics
title_full Extended Evaluation of Viral Diversity in Lake Baikal through Metagenomics
title_fullStr Extended Evaluation of Viral Diversity in Lake Baikal through Metagenomics
title_full_unstemmed Extended Evaluation of Viral Diversity in Lake Baikal through Metagenomics
title_short Extended Evaluation of Viral Diversity in Lake Baikal through Metagenomics
title_sort extended evaluation of viral diversity in lake baikal through metagenomics
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8066274/
https://www.ncbi.nlm.nih.gov/pubmed/33916464
http://dx.doi.org/10.3390/microorganisms9040760
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