Cargando…

Genome sequence analysis of the beneficial Bacillus subtilis PTA-271 isolated from a Vitis vinifera (cv. Chardonnay) rhizospheric soil: assets for sustainable biocontrol

BACKGROUND: Bacillus subtilis strains have been widely studied for their numerous benefits in agriculture, including viticulture. Providing several assets, B. subtilis spp. are described as promising plant-protectors against many pathogens and as influencers to adaptations in a changing environment....

Descripción completa

Detalles Bibliográficos
Autores principales: Leal, Catarina, Fontaine, Florence, Aziz, Aziz, Egas, Conceiçao, Clément, Christophe, Trotel-Aziz, Patricia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8067347/
https://www.ncbi.nlm.nih.gov/pubmed/33902737
http://dx.doi.org/10.1186/s40793-021-00372-3
_version_ 1783682781829660672
author Leal, Catarina
Fontaine, Florence
Aziz, Aziz
Egas, Conceiçao
Clément, Christophe
Trotel-Aziz, Patricia
author_facet Leal, Catarina
Fontaine, Florence
Aziz, Aziz
Egas, Conceiçao
Clément, Christophe
Trotel-Aziz, Patricia
author_sort Leal, Catarina
collection PubMed
description BACKGROUND: Bacillus subtilis strains have been widely studied for their numerous benefits in agriculture, including viticulture. Providing several assets, B. subtilis spp. are described as promising plant-protectors against many pathogens and as influencers to adaptations in a changing environment. This study reports the draft genome sequence of the beneficial Bacillus subtilis PTA-271, isolated from the rhizospheric soil of healthy Vitis vinifera cv. Chardonnay at Champagne Region in France, attempting to draw outlines of its full biocontrol capacity. RESULTS: The PTA-271 genome has a size of 4,001,755 bp, with 43.78% of G + C content and 3945 protein coding genes. The draft genome of PTA-271 putatively highlights a functional swarming motility system hypothesizing a colonizing capacity and a strong interacting capacity, strong survival capacities and a set of genes encoding for bioactive substances. Predicted bioactive compounds are known to: stimulate plant growth or defenses such as hormones and elicitors, influence beneficial microbiota, and counteract pathogen aggressiveness such as effectors and many kinds of detoxifying enzymes. CONCLUSIONS: Plurality of the putatively encoded biomolecules by Bacillus subtilis PTA-271 genome suggests environmentally robust biocontrol potential of PTA-271, protecting plants against a broad spectrum of pathogens. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s40793-021-00372-3.
format Online
Article
Text
id pubmed-8067347
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-80673472021-04-26 Genome sequence analysis of the beneficial Bacillus subtilis PTA-271 isolated from a Vitis vinifera (cv. Chardonnay) rhizospheric soil: assets for sustainable biocontrol Leal, Catarina Fontaine, Florence Aziz, Aziz Egas, Conceiçao Clément, Christophe Trotel-Aziz, Patricia Environ Microbiome Research Article BACKGROUND: Bacillus subtilis strains have been widely studied for their numerous benefits in agriculture, including viticulture. Providing several assets, B. subtilis spp. are described as promising plant-protectors against many pathogens and as influencers to adaptations in a changing environment. This study reports the draft genome sequence of the beneficial Bacillus subtilis PTA-271, isolated from the rhizospheric soil of healthy Vitis vinifera cv. Chardonnay at Champagne Region in France, attempting to draw outlines of its full biocontrol capacity. RESULTS: The PTA-271 genome has a size of 4,001,755 bp, with 43.78% of G + C content and 3945 protein coding genes. The draft genome of PTA-271 putatively highlights a functional swarming motility system hypothesizing a colonizing capacity and a strong interacting capacity, strong survival capacities and a set of genes encoding for bioactive substances. Predicted bioactive compounds are known to: stimulate plant growth or defenses such as hormones and elicitors, influence beneficial microbiota, and counteract pathogen aggressiveness such as effectors and many kinds of detoxifying enzymes. CONCLUSIONS: Plurality of the putatively encoded biomolecules by Bacillus subtilis PTA-271 genome suggests environmentally robust biocontrol potential of PTA-271, protecting plants against a broad spectrum of pathogens. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s40793-021-00372-3. BioMed Central 2021-01-29 /pmc/articles/PMC8067347/ /pubmed/33902737 http://dx.doi.org/10.1186/s40793-021-00372-3 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
Leal, Catarina
Fontaine, Florence
Aziz, Aziz
Egas, Conceiçao
Clément, Christophe
Trotel-Aziz, Patricia
Genome sequence analysis of the beneficial Bacillus subtilis PTA-271 isolated from a Vitis vinifera (cv. Chardonnay) rhizospheric soil: assets for sustainable biocontrol
title Genome sequence analysis of the beneficial Bacillus subtilis PTA-271 isolated from a Vitis vinifera (cv. Chardonnay) rhizospheric soil: assets for sustainable biocontrol
title_full Genome sequence analysis of the beneficial Bacillus subtilis PTA-271 isolated from a Vitis vinifera (cv. Chardonnay) rhizospheric soil: assets for sustainable biocontrol
title_fullStr Genome sequence analysis of the beneficial Bacillus subtilis PTA-271 isolated from a Vitis vinifera (cv. Chardonnay) rhizospheric soil: assets for sustainable biocontrol
title_full_unstemmed Genome sequence analysis of the beneficial Bacillus subtilis PTA-271 isolated from a Vitis vinifera (cv. Chardonnay) rhizospheric soil: assets for sustainable biocontrol
title_short Genome sequence analysis of the beneficial Bacillus subtilis PTA-271 isolated from a Vitis vinifera (cv. Chardonnay) rhizospheric soil: assets for sustainable biocontrol
title_sort genome sequence analysis of the beneficial bacillus subtilis pta-271 isolated from a vitis vinifera (cv. chardonnay) rhizospheric soil: assets for sustainable biocontrol
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8067347/
https://www.ncbi.nlm.nih.gov/pubmed/33902737
http://dx.doi.org/10.1186/s40793-021-00372-3
work_keys_str_mv AT lealcatarina genomesequenceanalysisofthebeneficialbacillussubtilispta271isolatedfromavitisviniferacvchardonnayrhizosphericsoilassetsforsustainablebiocontrol
AT fontaineflorence genomesequenceanalysisofthebeneficialbacillussubtilispta271isolatedfromavitisviniferacvchardonnayrhizosphericsoilassetsforsustainablebiocontrol
AT azizaziz genomesequenceanalysisofthebeneficialbacillussubtilispta271isolatedfromavitisviniferacvchardonnayrhizosphericsoilassetsforsustainablebiocontrol
AT egasconceicao genomesequenceanalysisofthebeneficialbacillussubtilispta271isolatedfromavitisviniferacvchardonnayrhizosphericsoilassetsforsustainablebiocontrol
AT clementchristophe genomesequenceanalysisofthebeneficialbacillussubtilispta271isolatedfromavitisviniferacvchardonnayrhizosphericsoilassetsforsustainablebiocontrol
AT trotelazizpatricia genomesequenceanalysisofthebeneficialbacillussubtilispta271isolatedfromavitisviniferacvchardonnayrhizosphericsoilassetsforsustainablebiocontrol