Cargando…

Prebiotic Route to Thymine from Formamide—A Combined Experimental–Theoretical Study

Synthesis of RNA nucleobases from formamide is one of the recurring topics of prebiotic chemistry research. Earlier reports suggest that thymine, the substitute for uracil in DNA, may also be synthesized from formamide in the presence of catalysts enabling conversion of formamide to formaldehyde. In...

Descripción completa

Detalles Bibliográficos
Autores principales: Petera, Lukáš, Mrazikova, Klaudia, Nejdl, Lukas, Zemankova, Kristyna, Vaculovicova, Marketa, Pastorek, Adam, Civis, Svatopluk, Kubelik, Petr, Heays, Alan, Cassone, Giuseppe, Sponer, Jiri, Ferus, Martin, Sponer, Judit
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8069957/
https://www.ncbi.nlm.nih.gov/pubmed/33924594
http://dx.doi.org/10.3390/molecules26082248
_version_ 1783683358733107200
author Petera, Lukáš
Mrazikova, Klaudia
Nejdl, Lukas
Zemankova, Kristyna
Vaculovicova, Marketa
Pastorek, Adam
Civis, Svatopluk
Kubelik, Petr
Heays, Alan
Cassone, Giuseppe
Sponer, Jiri
Ferus, Martin
Sponer, Judit
author_facet Petera, Lukáš
Mrazikova, Klaudia
Nejdl, Lukas
Zemankova, Kristyna
Vaculovicova, Marketa
Pastorek, Adam
Civis, Svatopluk
Kubelik, Petr
Heays, Alan
Cassone, Giuseppe
Sponer, Jiri
Ferus, Martin
Sponer, Judit
author_sort Petera, Lukáš
collection PubMed
description Synthesis of RNA nucleobases from formamide is one of the recurring topics of prebiotic chemistry research. Earlier reports suggest that thymine, the substitute for uracil in DNA, may also be synthesized from formamide in the presence of catalysts enabling conversion of formamide to formaldehyde. In the current paper, we show that to a lesser extent conversion of uracil to thymine may occur even in the absence of catalysts. This is enabled by the presence of formic acid in the reaction mixture that forms as the hydrolysis product of formamide. Under the reaction conditions of our study, the disproportionation of formic acid may produce formaldehyde that hydroxymethylates uracil in the first step of the conversion process. The experiments are supplemented by quantum chemical modeling of the reaction pathway, supporting the plausibility of the mechanism suggested by Saladino and coworkers.
format Online
Article
Text
id pubmed-8069957
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-80699572021-04-26 Prebiotic Route to Thymine from Formamide—A Combined Experimental–Theoretical Study Petera, Lukáš Mrazikova, Klaudia Nejdl, Lukas Zemankova, Kristyna Vaculovicova, Marketa Pastorek, Adam Civis, Svatopluk Kubelik, Petr Heays, Alan Cassone, Giuseppe Sponer, Jiri Ferus, Martin Sponer, Judit Molecules Article Synthesis of RNA nucleobases from formamide is one of the recurring topics of prebiotic chemistry research. Earlier reports suggest that thymine, the substitute for uracil in DNA, may also be synthesized from formamide in the presence of catalysts enabling conversion of formamide to formaldehyde. In the current paper, we show that to a lesser extent conversion of uracil to thymine may occur even in the absence of catalysts. This is enabled by the presence of formic acid in the reaction mixture that forms as the hydrolysis product of formamide. Under the reaction conditions of our study, the disproportionation of formic acid may produce formaldehyde that hydroxymethylates uracil in the first step of the conversion process. The experiments are supplemented by quantum chemical modeling of the reaction pathway, supporting the plausibility of the mechanism suggested by Saladino and coworkers. MDPI 2021-04-13 /pmc/articles/PMC8069957/ /pubmed/33924594 http://dx.doi.org/10.3390/molecules26082248 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Petera, Lukáš
Mrazikova, Klaudia
Nejdl, Lukas
Zemankova, Kristyna
Vaculovicova, Marketa
Pastorek, Adam
Civis, Svatopluk
Kubelik, Petr
Heays, Alan
Cassone, Giuseppe
Sponer, Jiri
Ferus, Martin
Sponer, Judit
Prebiotic Route to Thymine from Formamide—A Combined Experimental–Theoretical Study
title Prebiotic Route to Thymine from Formamide—A Combined Experimental–Theoretical Study
title_full Prebiotic Route to Thymine from Formamide—A Combined Experimental–Theoretical Study
title_fullStr Prebiotic Route to Thymine from Formamide—A Combined Experimental–Theoretical Study
title_full_unstemmed Prebiotic Route to Thymine from Formamide—A Combined Experimental–Theoretical Study
title_short Prebiotic Route to Thymine from Formamide—A Combined Experimental–Theoretical Study
title_sort prebiotic route to thymine from formamide—a combined experimental–theoretical study
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8069957/
https://www.ncbi.nlm.nih.gov/pubmed/33924594
http://dx.doi.org/10.3390/molecules26082248
work_keys_str_mv AT peteralukas prebioticroutetothyminefromformamideacombinedexperimentaltheoreticalstudy
AT mrazikovaklaudia prebioticroutetothyminefromformamideacombinedexperimentaltheoreticalstudy
AT nejdllukas prebioticroutetothyminefromformamideacombinedexperimentaltheoreticalstudy
AT zemankovakristyna prebioticroutetothyminefromformamideacombinedexperimentaltheoreticalstudy
AT vaculovicovamarketa prebioticroutetothyminefromformamideacombinedexperimentaltheoreticalstudy
AT pastorekadam prebioticroutetothyminefromformamideacombinedexperimentaltheoreticalstudy
AT civissvatopluk prebioticroutetothyminefromformamideacombinedexperimentaltheoreticalstudy
AT kubelikpetr prebioticroutetothyminefromformamideacombinedexperimentaltheoreticalstudy
AT heaysalan prebioticroutetothyminefromformamideacombinedexperimentaltheoreticalstudy
AT cassonegiuseppe prebioticroutetothyminefromformamideacombinedexperimentaltheoreticalstudy
AT sponerjiri prebioticroutetothyminefromformamideacombinedexperimentaltheoreticalstudy
AT ferusmartin prebioticroutetothyminefromformamideacombinedexperimentaltheoreticalstudy
AT sponerjudit prebioticroutetothyminefromformamideacombinedexperimentaltheoreticalstudy