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Prebiotic Route to Thymine from Formamide—A Combined Experimental–Theoretical Study
Synthesis of RNA nucleobases from formamide is one of the recurring topics of prebiotic chemistry research. Earlier reports suggest that thymine, the substitute for uracil in DNA, may also be synthesized from formamide in the presence of catalysts enabling conversion of formamide to formaldehyde. In...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8069957/ https://www.ncbi.nlm.nih.gov/pubmed/33924594 http://dx.doi.org/10.3390/molecules26082248 |
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author | Petera, Lukáš Mrazikova, Klaudia Nejdl, Lukas Zemankova, Kristyna Vaculovicova, Marketa Pastorek, Adam Civis, Svatopluk Kubelik, Petr Heays, Alan Cassone, Giuseppe Sponer, Jiri Ferus, Martin Sponer, Judit |
author_facet | Petera, Lukáš Mrazikova, Klaudia Nejdl, Lukas Zemankova, Kristyna Vaculovicova, Marketa Pastorek, Adam Civis, Svatopluk Kubelik, Petr Heays, Alan Cassone, Giuseppe Sponer, Jiri Ferus, Martin Sponer, Judit |
author_sort | Petera, Lukáš |
collection | PubMed |
description | Synthesis of RNA nucleobases from formamide is one of the recurring topics of prebiotic chemistry research. Earlier reports suggest that thymine, the substitute for uracil in DNA, may also be synthesized from formamide in the presence of catalysts enabling conversion of formamide to formaldehyde. In the current paper, we show that to a lesser extent conversion of uracil to thymine may occur even in the absence of catalysts. This is enabled by the presence of formic acid in the reaction mixture that forms as the hydrolysis product of formamide. Under the reaction conditions of our study, the disproportionation of formic acid may produce formaldehyde that hydroxymethylates uracil in the first step of the conversion process. The experiments are supplemented by quantum chemical modeling of the reaction pathway, supporting the plausibility of the mechanism suggested by Saladino and coworkers. |
format | Online Article Text |
id | pubmed-8069957 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-80699572021-04-26 Prebiotic Route to Thymine from Formamide—A Combined Experimental–Theoretical Study Petera, Lukáš Mrazikova, Klaudia Nejdl, Lukas Zemankova, Kristyna Vaculovicova, Marketa Pastorek, Adam Civis, Svatopluk Kubelik, Petr Heays, Alan Cassone, Giuseppe Sponer, Jiri Ferus, Martin Sponer, Judit Molecules Article Synthesis of RNA nucleobases from formamide is one of the recurring topics of prebiotic chemistry research. Earlier reports suggest that thymine, the substitute for uracil in DNA, may also be synthesized from formamide in the presence of catalysts enabling conversion of formamide to formaldehyde. In the current paper, we show that to a lesser extent conversion of uracil to thymine may occur even in the absence of catalysts. This is enabled by the presence of formic acid in the reaction mixture that forms as the hydrolysis product of formamide. Under the reaction conditions of our study, the disproportionation of formic acid may produce formaldehyde that hydroxymethylates uracil in the first step of the conversion process. The experiments are supplemented by quantum chemical modeling of the reaction pathway, supporting the plausibility of the mechanism suggested by Saladino and coworkers. MDPI 2021-04-13 /pmc/articles/PMC8069957/ /pubmed/33924594 http://dx.doi.org/10.3390/molecules26082248 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Petera, Lukáš Mrazikova, Klaudia Nejdl, Lukas Zemankova, Kristyna Vaculovicova, Marketa Pastorek, Adam Civis, Svatopluk Kubelik, Petr Heays, Alan Cassone, Giuseppe Sponer, Jiri Ferus, Martin Sponer, Judit Prebiotic Route to Thymine from Formamide—A Combined Experimental–Theoretical Study |
title | Prebiotic Route to Thymine from Formamide—A Combined Experimental–Theoretical Study |
title_full | Prebiotic Route to Thymine from Formamide—A Combined Experimental–Theoretical Study |
title_fullStr | Prebiotic Route to Thymine from Formamide—A Combined Experimental–Theoretical Study |
title_full_unstemmed | Prebiotic Route to Thymine from Formamide—A Combined Experimental–Theoretical Study |
title_short | Prebiotic Route to Thymine from Formamide—A Combined Experimental–Theoretical Study |
title_sort | prebiotic route to thymine from formamide—a combined experimental–theoretical study |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8069957/ https://www.ncbi.nlm.nih.gov/pubmed/33924594 http://dx.doi.org/10.3390/molecules26082248 |
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