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Knowledge Graphs for COVID-19: An Exploratory Review of the Current Landscape
Background: Searching through the COVID-19 research literature to gain actionable clinical insight is a formidable task, even for experts. The usefulness of this corpus in terms of improving patient care is tied to the ability to see the big picture that emerges when the studies are seen in conjunct...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8070774/ https://www.ncbi.nlm.nih.gov/pubmed/33919882 http://dx.doi.org/10.3390/jpm11040300 |
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author | Chatterjee, Avishek Nardi, Cosimo Oberije, Cary Lambin, Philippe |
author_facet | Chatterjee, Avishek Nardi, Cosimo Oberije, Cary Lambin, Philippe |
author_sort | Chatterjee, Avishek |
collection | PubMed |
description | Background: Searching through the COVID-19 research literature to gain actionable clinical insight is a formidable task, even for experts. The usefulness of this corpus in terms of improving patient care is tied to the ability to see the big picture that emerges when the studies are seen in conjunction rather than in isolation. When the answer to a search query requires linking together multiple pieces of information across documents, simple keyword searches are insufficient. To answer such complex information needs, an innovative artificial intelligence (AI) technology named a knowledge graph (KG) could prove to be effective. Methods: We conducted an exploratory literature review of KG applications in the context of COVID-19. The search term used was “covid-19 knowledge graph”. In addition to PubMed, the first five pages of search results for Google Scholar and Google were considered for inclusion. Google Scholar was used to include non-peer-reviewed or non-indexed articles such as pre-prints and conference proceedings. Google was used to identify companies or consortiums active in this domain that have not published any literature, peer-reviewed or otherwise. Results: Our search yielded 34 results on PubMed and 50 results each on Google and Google Scholar. We found KGs being used for facilitating literature search, drug repurposing, clinical trial mapping, and risk factor analysis. Conclusions: Our synopses of these works make a compelling case for the utility of this nascent field of research. |
format | Online Article Text |
id | pubmed-8070774 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-80707742021-04-26 Knowledge Graphs for COVID-19: An Exploratory Review of the Current Landscape Chatterjee, Avishek Nardi, Cosimo Oberije, Cary Lambin, Philippe J Pers Med Review Background: Searching through the COVID-19 research literature to gain actionable clinical insight is a formidable task, even for experts. The usefulness of this corpus in terms of improving patient care is tied to the ability to see the big picture that emerges when the studies are seen in conjunction rather than in isolation. When the answer to a search query requires linking together multiple pieces of information across documents, simple keyword searches are insufficient. To answer such complex information needs, an innovative artificial intelligence (AI) technology named a knowledge graph (KG) could prove to be effective. Methods: We conducted an exploratory literature review of KG applications in the context of COVID-19. The search term used was “covid-19 knowledge graph”. In addition to PubMed, the first five pages of search results for Google Scholar and Google were considered for inclusion. Google Scholar was used to include non-peer-reviewed or non-indexed articles such as pre-prints and conference proceedings. Google was used to identify companies or consortiums active in this domain that have not published any literature, peer-reviewed or otherwise. Results: Our search yielded 34 results on PubMed and 50 results each on Google and Google Scholar. We found KGs being used for facilitating literature search, drug repurposing, clinical trial mapping, and risk factor analysis. Conclusions: Our synopses of these works make a compelling case for the utility of this nascent field of research. MDPI 2021-04-14 /pmc/articles/PMC8070774/ /pubmed/33919882 http://dx.doi.org/10.3390/jpm11040300 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Review Chatterjee, Avishek Nardi, Cosimo Oberije, Cary Lambin, Philippe Knowledge Graphs for COVID-19: An Exploratory Review of the Current Landscape |
title | Knowledge Graphs for COVID-19: An Exploratory Review of the Current Landscape |
title_full | Knowledge Graphs for COVID-19: An Exploratory Review of the Current Landscape |
title_fullStr | Knowledge Graphs for COVID-19: An Exploratory Review of the Current Landscape |
title_full_unstemmed | Knowledge Graphs for COVID-19: An Exploratory Review of the Current Landscape |
title_short | Knowledge Graphs for COVID-19: An Exploratory Review of the Current Landscape |
title_sort | knowledge graphs for covid-19: an exploratory review of the current landscape |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8070774/ https://www.ncbi.nlm.nih.gov/pubmed/33919882 http://dx.doi.org/10.3390/jpm11040300 |
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