Complete genome sequence of Escherichia coli K_EC180, a bacterium producing shiga-like toxin isolated from swine feces

Escherichia coli normally colonizes the lower intestine of animals and humans, but some serotypes are foodborne pathogens. The Escherichia coli K_EC180 was isolated from swine feces that were collected from a weaner pig. In this genome announcement, E. coli K_EC180 was sequenced using PacBio RS II a...

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Autores principales: Kim, Hyeri, Cho, Jae Hyoung, Cho, Jin Ho, Song, Minho, Shin, Hakdong, Kim, Sheena, Kim, Eun Sol, Kim, Hyeun Bum, Lee, Ju-Hoon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korean Society of Animal Sciences and Technology 2021
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8071739/
https://www.ncbi.nlm.nih.gov/pubmed/33987619
http://dx.doi.org/10.5187/jast.2021.e38
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author Kim, Hyeri
Cho, Jae Hyoung
Cho, Jin Ho
Song, Minho
Shin, Hakdong
Kim, Sheena
Kim, Eun Sol
Kim, Hyeun Bum
Lee, Ju-Hoon
author_facet Kim, Hyeri
Cho, Jae Hyoung
Cho, Jin Ho
Song, Minho
Shin, Hakdong
Kim, Sheena
Kim, Eun Sol
Kim, Hyeun Bum
Lee, Ju-Hoon
author_sort Kim, Hyeri
collection PubMed
description Escherichia coli normally colonizes the lower intestine of animals and humans, but some serotypes are foodborne pathogens. The Escherichia coli K_EC180 was isolated from swine feces that were collected from a weaner pig. In this genome announcement, E. coli K_EC180 was sequenced using PacBio RS II and Illumina NextSeq 500 platforms. The complete chromosome of E. coli K_EC180 is composed of one circular chromosome (5,017,281 bp) with 50.4% of guanine + cytosine (G + C) content, 4,935 of coding sequence (CDS), 88 of tRNA, and 22 of rRNA genes. The complete genome of E. coli K_EC180 contains the toxin genes such as shiga-like toxins (stxA and stxB).
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spelling pubmed-80717392021-05-05 Complete genome sequence of Escherichia coli K_EC180, a bacterium producing shiga-like toxin isolated from swine feces Kim, Hyeri Cho, Jae Hyoung Cho, Jin Ho Song, Minho Shin, Hakdong Kim, Sheena Kim, Eun Sol Kim, Hyeun Bum Lee, Ju-Hoon J Anim Sci Technol Research Article Escherichia coli normally colonizes the lower intestine of animals and humans, but some serotypes are foodborne pathogens. The Escherichia coli K_EC180 was isolated from swine feces that were collected from a weaner pig. In this genome announcement, E. coli K_EC180 was sequenced using PacBio RS II and Illumina NextSeq 500 platforms. The complete chromosome of E. coli K_EC180 is composed of one circular chromosome (5,017,281 bp) with 50.4% of guanine + cytosine (G + C) content, 4,935 of coding sequence (CDS), 88 of tRNA, and 22 of rRNA genes. The complete genome of E. coli K_EC180 contains the toxin genes such as shiga-like toxins (stxA and stxB). Korean Society of Animal Sciences and Technology 2021-03 2021-03-31 /pmc/articles/PMC8071739/ /pubmed/33987619 http://dx.doi.org/10.5187/jast.2021.e38 Text en © Copyright 2021 Korean Society of Animal Science and Technology https://creativecommons.org/licenses/by-nc/4.0/This is an Open-Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Kim, Hyeri
Cho, Jae Hyoung
Cho, Jin Ho
Song, Minho
Shin, Hakdong
Kim, Sheena
Kim, Eun Sol
Kim, Hyeun Bum
Lee, Ju-Hoon
Complete genome sequence of Escherichia coli K_EC180, a bacterium producing shiga-like toxin isolated from swine feces
title Complete genome sequence of Escherichia coli K_EC180, a bacterium producing shiga-like toxin isolated from swine feces
title_full Complete genome sequence of Escherichia coli K_EC180, a bacterium producing shiga-like toxin isolated from swine feces
title_fullStr Complete genome sequence of Escherichia coli K_EC180, a bacterium producing shiga-like toxin isolated from swine feces
title_full_unstemmed Complete genome sequence of Escherichia coli K_EC180, a bacterium producing shiga-like toxin isolated from swine feces
title_short Complete genome sequence of Escherichia coli K_EC180, a bacterium producing shiga-like toxin isolated from swine feces
title_sort complete genome sequence of escherichia coli k_ec180, a bacterium producing shiga-like toxin isolated from swine feces
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8071739/
https://www.ncbi.nlm.nih.gov/pubmed/33987619
http://dx.doi.org/10.5187/jast.2021.e38
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