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Integrated Collection of Stem Cell Bank Data, a Data Portal for Standardized Stem Cell Information

The past decade has witnessed an extremely rapid increase in the number of newly established stem cell lines. However, due to the lack of a standardized format, data exchange among stem cell line resources has been challenging, and no system can search all stem cell lines across resources worldwide....

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Detalles Bibliográficos
Autores principales: Chen, Ying, Sakurai, Kunie, Maeda, Sumihiro, Masui, Tohru, Okano, Hideyuki, Dewender, Johannes, Seltmann, Stefanie, Kurtz, Andreas, Masuya, Hiroshi, Nakamura, Yukio, Sheldon, Michael, Schneider, Juliane, Stacey, Glyn N., Panina, Yulia, Fujibuchi, Wataru
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8072026/
https://www.ncbi.nlm.nih.gov/pubmed/33740463
http://dx.doi.org/10.1016/j.stemcr.2021.02.014
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author Chen, Ying
Sakurai, Kunie
Maeda, Sumihiro
Masui, Tohru
Okano, Hideyuki
Dewender, Johannes
Seltmann, Stefanie
Kurtz, Andreas
Masuya, Hiroshi
Nakamura, Yukio
Sheldon, Michael
Schneider, Juliane
Stacey, Glyn N.
Panina, Yulia
Fujibuchi, Wataru
author_facet Chen, Ying
Sakurai, Kunie
Maeda, Sumihiro
Masui, Tohru
Okano, Hideyuki
Dewender, Johannes
Seltmann, Stefanie
Kurtz, Andreas
Masuya, Hiroshi
Nakamura, Yukio
Sheldon, Michael
Schneider, Juliane
Stacey, Glyn N.
Panina, Yulia
Fujibuchi, Wataru
author_sort Chen, Ying
collection PubMed
description The past decade has witnessed an extremely rapid increase in the number of newly established stem cell lines. However, due to the lack of a standardized format, data exchange among stem cell line resources has been challenging, and no system can search all stem cell lines across resources worldwide. To solve this problem, we have developed the Integrated Collection of Stem Cell Bank data (ICSCB) (http://icscb.stemcellinformatics.org/), the largest database search portal for stem cell line information, based on the standardized data items and terms of the MIACARM framework. Currently, ICSCB can retrieve >16,000 cell lines from four major data resources in Europe, Japan, and the United States. ICSCB is automatically updated to provide the latest cell line information, and its integrative search helps users collect cell line information for over 1,000 diseases, including many rare diseases worldwide, which has been a formidable task, thereby distinguishing itself from other database search portals.
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spelling pubmed-80720262021-04-29 Integrated Collection of Stem Cell Bank Data, a Data Portal for Standardized Stem Cell Information Chen, Ying Sakurai, Kunie Maeda, Sumihiro Masui, Tohru Okano, Hideyuki Dewender, Johannes Seltmann, Stefanie Kurtz, Andreas Masuya, Hiroshi Nakamura, Yukio Sheldon, Michael Schneider, Juliane Stacey, Glyn N. Panina, Yulia Fujibuchi, Wataru Stem Cell Reports Resource The past decade has witnessed an extremely rapid increase in the number of newly established stem cell lines. However, due to the lack of a standardized format, data exchange among stem cell line resources has been challenging, and no system can search all stem cell lines across resources worldwide. To solve this problem, we have developed the Integrated Collection of Stem Cell Bank data (ICSCB) (http://icscb.stemcellinformatics.org/), the largest database search portal for stem cell line information, based on the standardized data items and terms of the MIACARM framework. Currently, ICSCB can retrieve >16,000 cell lines from four major data resources in Europe, Japan, and the United States. ICSCB is automatically updated to provide the latest cell line information, and its integrative search helps users collect cell line information for over 1,000 diseases, including many rare diseases worldwide, which has been a formidable task, thereby distinguishing itself from other database search portals. Elsevier 2021-03-18 /pmc/articles/PMC8072026/ /pubmed/33740463 http://dx.doi.org/10.1016/j.stemcr.2021.02.014 Text en © 2021 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Resource
Chen, Ying
Sakurai, Kunie
Maeda, Sumihiro
Masui, Tohru
Okano, Hideyuki
Dewender, Johannes
Seltmann, Stefanie
Kurtz, Andreas
Masuya, Hiroshi
Nakamura, Yukio
Sheldon, Michael
Schneider, Juliane
Stacey, Glyn N.
Panina, Yulia
Fujibuchi, Wataru
Integrated Collection of Stem Cell Bank Data, a Data Portal for Standardized Stem Cell Information
title Integrated Collection of Stem Cell Bank Data, a Data Portal for Standardized Stem Cell Information
title_full Integrated Collection of Stem Cell Bank Data, a Data Portal for Standardized Stem Cell Information
title_fullStr Integrated Collection of Stem Cell Bank Data, a Data Portal for Standardized Stem Cell Information
title_full_unstemmed Integrated Collection of Stem Cell Bank Data, a Data Portal for Standardized Stem Cell Information
title_short Integrated Collection of Stem Cell Bank Data, a Data Portal for Standardized Stem Cell Information
title_sort integrated collection of stem cell bank data, a data portal for standardized stem cell information
topic Resource
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8072026/
https://www.ncbi.nlm.nih.gov/pubmed/33740463
http://dx.doi.org/10.1016/j.stemcr.2021.02.014
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